Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:57 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the tidybulk package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1855/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
tidybulk 1.2.1 (landing page) Stefano Mangiola
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
Package: tidybulk |
Version: 1.2.1 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/tidybulk_1.2.1.tar.gz && rm -rf tidybulk.buildbin-libdir && mkdir tidybulk.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tidybulk.buildbin-libdir tidybulk_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL tidybulk_1.2.1.zip && rm tidybulk_1.2.1.tar.gz tidybulk_1.2.1.zip |
StartedAt: 2021-05-05 18:41:34 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 18:43:53 -0400 (Wed, 05 May 2021) |
EllapsedTime: 138.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/tidybulk_1.2.1.tar.gz && rm -rf tidybulk.buildbin-libdir && mkdir tidybulk.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tidybulk.buildbin-libdir tidybulk_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL tidybulk_1.2.1.zip && rm tidybulk_1.2.1.tar.gz tidybulk_1.2.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3656k 100 3656k 0 0 46.8M 0 --:--:-- --:--:-- --:--:-- 47.6M install for i386 * installing *source* package 'tidybulk' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to 'floor' ** help *** installing help indices converting help for package 'tidybulk' finding HTML links ... done X_cibersort html add_attr html add_class html add_scaled_counts_bulk.calcNormFactor html add_scaled_counts_bulk.get_low_expressed html adjust_abundance-methods html aggregate_duplicated_transcripts_bulk html aggregate_duplicates-methods html as_matrix html bind html breast_tcga_mini html check_if_counts_is_na html check_if_duplicated_genes html check_if_wrong_input html cluster_elements-methods html counts html counts_ensembl html counts_mini html create_tt_from_bam_sam_bulk html create_tt_from_tibble_bulk html deconvolve_cellularity-methods html describe_transcript html distinct html dplyr-methods html drop_attr html drop_class html ensembl_symbol_mapping html ensembl_to_symbol-methods html error_if_counts_is_na html error_if_duplicated_genes html error_if_log_transformed html error_if_wrong_input html fill_NA_using_formula html fill_NA_using_value html fill_NA_with_row_median html fill_missing_abundance-methods html filter html flybaseIDs html full_join html get_abundance_norm_if_exists html get_adjusted_counts_for_unwanted_variation_bulk html get_bibliography-methods html get_cell_type_proportions html get_clusters_SNN_bulk html get_clusters_kmeans_bulk html get_differential_transcript_abundance_bulk html get_differential_transcript_abundance_bulk_voom html get_differential_transcript_abundance_deseq2 html get_elements html get_elements_features html get_elements_features_abundance html get_reduced_dimensions_MDS_bulk html get_reduced_dimensions_PCA_bulk html get_reduced_dimensions_TSNE_bulk html get_rotated_dimensions html get_sample html get_sample_counts html get_sample_transcript html get_sample_transcript_counts html get_scaled_counts_bulk html get_symbol_from_ensembl html get_transcript html get_x_y_annotation_columns html group_by html identify_abundant-methods html ifelse2_pipe html ifelse_pipe html impute_missing_abundance-methods html inner_join html keep_abundant-methods html keep_variable-methods html keep_variable_transcripts html left_join html log10_reverse_trans html logit_trans html mutate html parse_formula html parse_formula_survival html pipe html pivot_sample-methods html pivot_transcript-methods html prepend html quo_names html reduce_dimensions-methods html reexports html remove_redundancy-methods html remove_redundancy_elements_though_reduced_dimensions html remove_redundancy_elements_through_correlation html rename html right_join html rotate_dimensions-methods html rowwise html run_epic html run_llsr html scale_abundance-methods html scale_design html se html se_mini html select_closest_pairs html summarise html symbol_to_entrez html test_deseq2_df html test_differential_abundance-methods html test_differential_cellularity-methods html test_differential_cellularity_ html test_gene_enrichment-methods html test_gene_enrichment_bulk_EGSEA html test_gene_overrepresentation-methods html tidybulk-methods html tidybulk_SAM_BAM-methods html tidybulk_to_SummarizedExperiment html tidyr-methods html vignette_manuscript_signature_boxplot html vignette_manuscript_signature_tsne html vignette_manuscript_signature_tsne2 html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'tidybulk' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'tidybulk' as tidybulk_1.2.1.zip * DONE (tidybulk) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'tidybulk' successfully unpacked and MD5 sums checked