Multiple platform build/check report for BioC 3.12 - CHECK report for randRotation on tokay1

Package: randRotation

Version: 1.2.2

Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:randRotation.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings randRotation_1.2.2.tar.gz

StartedAt: 2021-05-06 05:59:15 -0400 (Thu, 06 May 2021)

EndedAt: 2021-05-06 06:00:48 -0400 (Thu, 06 May 2021)

EllapsedTime: 93.6 seconds

RetCode: 0

Status: OK

CheckDir: randRotation.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:randRotation.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings randRotation_1.2.2.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/randRotation.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'randRotation/DESCRIPTION' ... OK
* this is package 'randRotation' version '1.2.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'randRotation' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
pFdr 6.53   0.41    6.93
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
     user system elapsed
pFdr 4.97   0.13    5.09
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/randRotation_1.2.2.tar.gz && rm -rf randRotation.buildbin-libdir && mkdir randRotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=randRotation.buildbin-libdir randRotation_1.2.2.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL randRotation_1.2.2.zip && rm randRotation_1.2.2.tar.gz randRotation_1.2.2.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 43405  100 43405    0     0  2203k      0 --:--:-- --:--:-- --:--:-- 2354k

install for i386

* installing *source* package 'randRotation' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: randRotation
*** installing help indices
  converting help for package 'randRotation'
    finding HTML links ... done
    X_decomp                                html  
    contrastModel                           html  
    df_estimate                             html  
    dim                                     html  
    dimnames                                html  
    fdr_p                                   html  
    initBatchRandrot-class                  html  
    initRandrot-class                       html  
    initRandrot                             html  
    initRandrotW                            html  
    pFdr                                    html  
    qqunif                                  html  
    randRotation-deprecated                 html  
    randRotation-package                    html  
    randorth                                html  
    randpermut                              html  
    randrot                                 html  
    rotateStat-class                        html  
    rotateStat                              html  
    show                                    html  
    weights                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'randRotation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'randRotation' as randRotation_1.2.2.zip
* DONE (randRotation)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'randRotation' successfully unpacked and MD5 sums checked


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(randRotation)
> 
> test_check("randRotation")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
> 
> proc.time()
   user  system elapsed 
  12.15    0.46   20.70


R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(randRotation)
> 
> test_check("randRotation")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
> 
> proc.time()
   user  system elapsed 
  11.79    0.26   21.40

name	user	system	elapsed
X_decomp	0	0	0
contrastModel	0.01	0.00	0.01
df_estimate	0.01	0.00	0.02
initRandrot	0.11	0.00	0.11
initRandrotW	0.02	0.00	0.02
pFdr	6.53	0.41	6.93
qqunif	0.00	0.02	0.02
randorth	0.06	0.00	0.06
randpermut	0	0	0
randrot	0	0	0
rotateStat	0.72	0.01	0.74
weights	0.02	0.00	0.02

name	user	system	elapsed
X_decomp	0.02	0.00	0.02
contrastModel	0	0	0
df_estimate	0	0	0
initRandrot	0.07	0.00	0.08
initRandrotW	0.02	0.00	0.02
pFdr	4.97	0.13	5.09
qqunif	0.01	0.00	0.02
randorth	0.07	0.00	0.18
randpermut	0	0	0
randrot	0.01	0.00	0.02
rotateStat	0.66	0.01	0.67
weights	0	0	0

CHECK report for randRotation on tokay1

Summary

Command output

Installation output

Tests output

Example timings