Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:30:58 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the divergence package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 489/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
divergence 1.6.0 (landing page) Wikum Dinalankara
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: divergence |
Version: 1.6.0 |
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:divergence.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings divergence_1.6.0.tar.gz |
StartedAt: 2021-05-06 02:16:15 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 02:21:40 -0400 (Thu, 06 May 2021) |
EllapsedTime: 325.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: divergence.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:divergence.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings divergence_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/divergence.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'divergence/DESCRIPTION' ... OK * this is package 'divergence' version '1.6.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'divergence' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE check_SE: no visible binding for global variable 'data' computeSingleFeaturesetBinaryVector: no visible global function definition for 'dist' computeSingleFeaturesetSupport: no visible global function definition for 'dist' computeSingleFeaturesetSupport: no visible global function definition for 'quantile' computeSingleRange: no visible global function definition for 'quantile' getRangesBySections: no visible global function definition for 'detectCores' rowChiSq: no visible global function definition for 'chisq.test' rowChiSq: no visible global function definition for 'xtabs' Undefined global functions or variables: chisq.test data detectCores dist quantile xtabs Consider adding importFrom("stats", "chisq.test", "dist", "quantile", "xtabs") importFrom("utils", "data") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed computeChiSquaredTest 24.16 0.22 24.37 computeUnivariateDigitization 22.75 0.11 22.86 findUnivariateGammaWithSupport 22.72 0.00 22.77 computeMultivariateDigitization 8.22 0.19 8.45 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed computeChiSquaredTest 15.06 0.04 15.11 computeUnivariateDigitization 14.06 0.02 14.08 findUnivariateGammaWithSupport 13.72 0.00 13.72 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/divergence.Rcheck/00check.log' for details.
divergence.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/divergence_1.6.0.tar.gz && rm -rf divergence.buildbin-libdir && mkdir divergence.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=divergence.buildbin-libdir divergence_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL divergence_1.6.0.zip && rm divergence_1.6.0.tar.gz divergence_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1919k 100 1919k 0 0 9262k 0 --:--:-- --:--:-- --:--:-- 9317k install for i386 * installing *source* package 'divergence' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'divergence' finding HTML links ... done breastTCGA_ER html breastTCGA_Group html breastTCGA_Mat html computeChiSquaredTest html computeMultivariateBinaryMatrix html computeMultivariateDigitization html computeMultivariateSupport html computeQuantileMatrix html computeUnivariateDigitization html computeUnivariateSupport html computeUnivariateTernaryMatrix html findMultivariateGammaWithSupport html findUnivariateGammaWithSupport html msigdb_Hallmarks html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'divergence' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'divergence' as divergence_1.6.0.zip * DONE (divergence) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'divergence' successfully unpacked and MD5 sums checked
divergence.Rcheck/examples_i386/divergence-Ex.timings
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divergence.Rcheck/examples_x64/divergence-Ex.timings
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