Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:29:51 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the AGDEX package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 37/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
AGDEX 1.38.0 (landing page) Cuilan lani Gao
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: AGDEX |
Version: 1.38.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/AGDEX_1.38.0.tar.gz && rm -rf AGDEX.buildbin-libdir && mkdir AGDEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AGDEX.buildbin-libdir AGDEX_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL AGDEX_1.38.0.zip && rm AGDEX_1.38.0.tar.gz AGDEX_1.38.0.zip |
StartedAt: 2021-05-05 18:05:16 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 18:05:54 -0400 (Wed, 05 May 2021) |
EllapsedTime: 37.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/AGDEX_1.38.0.tar.gz && rm -rf AGDEX.buildbin-libdir && mkdir AGDEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AGDEX.buildbin-libdir AGDEX_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL AGDEX_1.38.0.zip && rm AGDEX_1.38.0.tar.gz AGDEX_1.38.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 330k 100 330k 0 0 15.1M 0 --:--:-- --:--:-- --:--:-- 16.1M install for i386 * installing *source* package 'AGDEX' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'AGDEX' finding HTML links ... done AGDEX-package html agdex html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpCQJdgm/R.INSTALLedc4397aa1/AGDEX/man/agdex.Rd:91: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpCQJdgm/R.INSTALLedc4397aa1/AGDEX/man/agdex.Rd:93: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic agdex.res html agdex.scatterplot html get.gset.result.details html gset.data html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpCQJdgm/R.INSTALLedc4397aa1/AGDEX/man/gset.data.Rd:24: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic human.data html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpCQJdgm/R.INSTALLedc4397aa1/AGDEX/man/human.data.Rd:35: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic make.dex.set.object html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpCQJdgm/R.INSTALLedc4397aa1/AGDEX/man/make.dex.set.object.Rd:37: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpCQJdgm/R.INSTALLedc4397aa1/AGDEX/man/make.dex.set.object.Rd:39: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic map.data html mouse.data html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpCQJdgm/R.INSTALLedc4397aa1/AGDEX/man/mouse.data.Rd:35: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic read.agdex.gset.details html read.agdex.result html write.agdex.gset.details html write.agdex.result html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'AGDEX' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'AGDEX' as AGDEX_1.38.0.zip * DONE (AGDEX) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'AGDEX' successfully unpacked and MD5 sums checked