Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:30:06 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the cancerclass package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 228/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cancerclass 1.34.0 (landing page) Daniel Kosztyla
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: cancerclass |
Version: 1.34.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/cancerclass_1.34.0.tar.gz && rm -rf cancerclass.buildbin-libdir && mkdir cancerclass.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cancerclass.buildbin-libdir cancerclass_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cancerclass_1.34.0.zip && rm cancerclass_1.34.0.tar.gz cancerclass_1.34.0.zip |
StartedAt: 2021-05-05 17:06:31 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 17:06:59 -0400 (Wed, 05 May 2021) |
EllapsedTime: 28.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/cancerclass_1.34.0.tar.gz && rm -rf cancerclass.buildbin-libdir && mkdir cancerclass.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cancerclass.buildbin-libdir cancerclass_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cancerclass_1.34.0.zip && rm cancerclass_1.34.0.tar.gz cancerclass_1.34.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1356k 100 1356k 0 0 15.7M 0 --:--:-- --:--:-- --:--:-- 15.9M install for i386 * installing *source* package 'cancerclass' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c copa.c -o copa.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cor.c -o cor.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fc.c -o fc.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c help.c -o help.o help.c: In function 'welch_df': help.c:263:19: warning: variable 'mean2' set but not used [-Wunused-but-set-variable] double mean1, mean2, var1, var2 = 0.0; ^~~~~ help.c:263:12: warning: variable 'mean1' set but not used [-Wunused-but-set-variable] double mean1, mean2, var1, var2 = 0.0; ^~~~~ help.c: In function 'bsortdesc': help.c:344:13: warning: variable 'anzahl' set but not used [-Wunused-but-set-variable] int i,k,anzahl=0; ^~~~~~ help.c: In function 'bsort': help.c:368:13: warning: variable 'anzahl' set but not used [-Wunused-but-set-variable] int i,k,anzahl=0; ^~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ort.c -o ort.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c os.c -o os.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c shift.c -o shift.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c statistics.c -o statistics.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c student.c -o student.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c throw.c -o throw.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c welch.c -o welch.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wilcox.c -o wilcox.o wilcox.c: In function 'wilcoxon': wilcox.c:37:8: warning: variable 'overall' set but not used [-Wunused-but-set-variable] int overall = 0; ^~~~~~~ wilcox.c: In function 'pwilcoxon': wilcox.c:75:8: warning: variable 'overall' set but not used [-Wunused-but-set-variable] int overall = 0; ^~~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o cancerclass.dll tmp.def copa.o cor.o fc.o help.o ort.o os.o shift.o statistics.o student.o throw.o welch.o wilcox.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/cancerclass.buildbin-libdir/00LOCK-cancerclass/00new/cancerclass/libs/i386 ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cancerclass' finding HTML links ... done GOLUB html cancerclass-internal html cancerclass-package html fit html loo html nvalidate html nvalidation-class html plot html plot3d html predict,predictor-method html prediction-class html predictor-class html summary,prediction-method html validate html validation-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'cancerclass' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c copa.c -o copa.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cor.c -o cor.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fc.c -o fc.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c help.c -o help.o help.c: In function 'welch_df': help.c:263:19: warning: variable 'mean2' set but not used [-Wunused-but-set-variable] double mean1, mean2, var1, var2 = 0.0; ^~~~~ help.c:263:12: warning: variable 'mean1' set but not used [-Wunused-but-set-variable] double mean1, mean2, var1, var2 = 0.0; ^~~~~ help.c: In function 'bsortdesc': help.c:344:13: warning: variable 'anzahl' set but not used [-Wunused-but-set-variable] int i,k,anzahl=0; ^~~~~~ help.c: In function 'bsort': help.c:368:13: warning: variable 'anzahl' set but not used [-Wunused-but-set-variable] int i,k,anzahl=0; ^~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ort.c -o ort.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c os.c -o os.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c shift.c -o shift.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c statistics.c -o statistics.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c student.c -o student.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c throw.c -o throw.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c welch.c -o welch.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wilcox.c -o wilcox.o wilcox.c: In function 'wilcoxon': wilcox.c:37:8: warning: variable 'overall' set but not used [-Wunused-but-set-variable] int overall = 0; ^~~~~~~ wilcox.c: In function 'pwilcoxon': wilcox.c:75:8: warning: variable 'overall' set but not used [-Wunused-but-set-variable] int overall = 0; ^~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o cancerclass.dll tmp.def copa.o cor.o fc.o help.o ort.o os.o shift.o statistics.o student.o throw.o welch.o wilcox.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/cancerclass.buildbin-libdir/cancerclass/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'cancerclass' as cancerclass_1.34.0.zip * DONE (cancerclass) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'cancerclass' successfully unpacked and MD5 sums checked