Back to Build/check report for BioC 3.11 experimental data |
This page was generated on 2020-10-15 20:45:45 -0400 (Thu, 15 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE cnvGSAdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 67/391 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
cnvGSAdata 1.24.0 Joseph Lugo
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ WARNINGS ] |
Package: cnvGSAdata |
Version: 1.24.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:cnvGSAdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings cnvGSAdata_1.24.0.tar.gz |
StartedAt: 2020-10-15 13:07:56 -0400 (Thu, 15 Oct 2020) |
EndedAt: 2020-10-15 13:09:01 -0400 (Thu, 15 Oct 2020) |
EllapsedTime: 64.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: cnvGSAdata.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:cnvGSAdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings cnvGSAdata_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/cnvGSAdata.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cnvGSAdata/DESCRIPTION’ ... OK * this is package ‘cnvGSAdata’ version ‘1.24.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cnvGSAdata’ can be installed ... OK * checking installed package size ... NOTE installed size is 9.1Mb sub-directories of 1Mb or more: data 5.2Mb extdata 3.8Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress cnvGSA_input_example.RData 2.4Mb 1.2Mb xz cnvGSA_output_example.RData 2.5Mb 768Kb xz gs_data_example.RData 310Kb 207Kb xz * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.11-data-experiment/meat/cnvGSAdata.Rcheck/00check.log’ for details.
cnvGSAdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL cnvGSAdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘cnvGSAdata’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cnvGSAdata)
cnvGSAdata.Rcheck/cnvGSAdata-Ex.timings
name | user | system | elapsed | |
cnv_AGP_demo.txt | 0.046 | 0.003 | 0.730 | |
enrGMT_AGP_demo.gmt | 1.673 | 0.068 | 2.400 | |
enrGeneric_AGP_demo.txt | 0.002 | 0.000 | 0.087 | |
gene_ID_demo.txt | 0.187 | 0.000 | 0.724 | |
kl_gene_AGP_demo.txt | 0.002 | 0.000 | 0.331 | |
kl_loci_AGP_demo.txt | 0.002 | 0.000 | 0.299 | |
ph_AGP_demo.txt | 0.013 | 0.000 | 0.548 | |