Back to "Blame Jeroen" build/check report for BioC 3.11

BUILD BIN report for mzID on tokay2

This page was generated on 2020-04-15 03:20:14 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE mzID PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 57/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mzID 1.25.0
Laurent Gatto
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/mzID
Branch: master
Last Commit: 5e4016e
Last Changed Date: 2019-10-29 13:37:00 -0400 (Tue, 29 Oct 2019)
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]

Summary

Package: mzID
Version: 1.25.0
Command: rm -rf mzID.buildbin-libdir && mkdir mzID.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mzID.buildbin-libdir mzID_1.25.0.tar.gz
StartedAt: 2020-04-15 00:09:39 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 00:09:51 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 12.1 seconds
RetCode: 0
Status:  OK  
PackageFile: mzID_1.25.0.zip
PackageFileSize: 837.1 KiB

Command output

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### Running command:
###
###   rm -rf mzID.buildbin-libdir && mkdir mzID.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mzID.buildbin-libdir mzID_1.25.0.tar.gz
###
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install for i386

* installing *source* package 'mzID' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mzID'
    finding HTML links ... done
    flatten                                 html  
    increment                               html  
    keyFor                                  html  
    mzID-class                              html  
    mzID-getters                            html  
    mzID-package                            html  
    mzID                                    html  
    mzIDCollection-class                    html  
    mzIDCollection                          html  
    mzIDdatabase-class                      html  
    mzIDdatabase                            html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpeY7ugx/R.INSTALL2d2c4b603af3/mzID/man/mzIDdatabase.Rd:11: file link 'xmlInternalTreeParse' in package 'XML' does not exist and so has been treated as a topic
    mzIDevidence-class                      html  
    mzIDevidence                            html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpeY7ugx/R.INSTALL2d2c4b603af3/mzID/man/mzIDevidence.Rd:11: file link 'xmlInternalTreeParse' in package 'XML' does not exist and so has been treated as a topic
    mzIDparameters-class                    html  
    mzIDparameters                          html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpeY7ugx/R.INSTALL2d2c4b603af3/mzID/man/mzIDparameters.Rd:11: file link 'xmlInternalTreeParse' in package 'XML' does not exist and so has been treated as a topic
    mzIDpeptides-class                      html  
    mzIDpeptides                            html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpeY7ugx/R.INSTALL2d2c4b603af3/mzID/man/mzIDpeptides.Rd:11: file link 'xmlInternalTreeParse' in package 'XML' does not exist and so has been treated as a topic
    mzIDpsm-class                           html  
    mzIDpsm                                 html  
Rd warning: C:/Users/bioctesting/bbs-3.11-bioc-testing/tmpdir/RtmpeY7ugx/R.INSTALL2d2c4b603af3/mzID/man/mzIDpsm.Rd:11: file link 'xmlInternalTreeParse' in package 'XML' does not exist and so has been treated as a topic
    removeDecoy                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'mzID' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mzID' as mzID_1.25.0.zip
* DONE (mzID)