Back to "Blame Jeroen" build/check report for BioC 3.11

BUILD BIN report for microRNA on tokay2

This page was generated on 2020-04-15 03:20:10 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE microRNA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 54/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
microRNA 1.45.0
"James F. Reid"
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/microRNA
Branch: master
Last Commit: 886d16c
Last Changed Date: 2019-10-29 13:34:51 -0400 (Tue, 29 Oct 2019)
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]

Summary

Package: microRNA
Version: 1.45.0
Command: rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microRNA.buildbin-libdir microRNA_1.45.0.tar.gz
StartedAt: 2020-04-14 23:49:51 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 23:50:18 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 27.3 seconds
RetCode: 0
Status:  OK  
PackageFile: microRNA_1.45.0.zip
PackageFileSize: 5.911 MiB

Command output

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### Running command:
###
###   rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microRNA.buildbin-libdir microRNA_1.45.0.tar.gz
###
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install for i386

* installing *source* package 'microRNA' ...
** using staged installation
** libs
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
         if (i == len[index] - 1) { // ignore null termination character
             ~~^~~~~~~~~~~~~~~~~
/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/microRNA.buildbin-libdir/00LOCK-microRNA/00new/microRNA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'microRNA'
    finding HTML links ... done
    RNA2DNA                                 html  
    get_selfhyb_subseq                      html  
    hsSeqs                                  html  
    hsTargets                               html  
    matchSeeds                              html  
    mmSeqs                                  html  
    mmTargets                               html  
    s3utr                                   html  
    seedRegions                             html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'microRNA' ...
** libs
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
         if (i == len[index] - 1) { // ignore null termination character
             ~~^~~~~~~~~~~~~~~~~
/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/microRNA.buildbin-libdir/microRNA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microRNA' as microRNA_1.45.0.zip
* DONE (microRNA)