Back to "Blame Jeroen" build/check report for BioC 3.11

INSTALL report for gdsfmt on tokay2

This page was generated on 2020-04-15 03:20:11 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE gdsfmt PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 37/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gdsfmt 1.23.11
Xiuwen Zheng
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/gdsfmt
Branch: master
Last Commit: 25c019b
Last Changed Date: 2020-04-13 18:14:18 -0400 (Mon, 13 Apr 2020)
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK 

Summary

Package: gdsfmt
Version: 1.23.11
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/gdsfmt_1.23.11.tar.gz && rm -rf gdsfmt.buildbin-libdir && mkdir gdsfmt.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gdsfmt.buildbin-libdir gdsfmt_1.23.11.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL gdsfmt_1.23.11.zip && rm gdsfmt_1.23.11.tar.gz gdsfmt_1.23.11.zip
StartedAt: 2020-04-14 17:31:05 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 17:36:40 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 334.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/gdsfmt_1.23.11.tar.gz && rm -rf gdsfmt.buildbin-libdir && mkdir gdsfmt.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gdsfmt.buildbin-libdir gdsfmt_1.23.11.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL gdsfmt_1.23.11.zip && rm gdsfmt_1.23.11.tar.gz gdsfmt_1.23.11.zip
###
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install for i386

* installing *source* package 'gdsfmt' ...
** using staged installation
** libs
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c R_CoreArray.cpp -o R_CoreArray.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c gdsfmt.cpp -o gdsfmt.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c digest.cpp -o digest.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dAny.cpp -o CoreArray/dAny.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dBase.cpp -o CoreArray/dBase.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dFile.cpp -o CoreArray/dFile.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dRealGDS.cpp -o CoreArray/dRealGDS.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dStrGDS.cpp -o CoreArray/dStrGDS.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dStream.cpp -o CoreArray/dStream.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
/mingw32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dSparse.cpp -o CoreArray/dSparse.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/adler32.c -o ZLIB/adler32.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/compress.c -o ZLIB/compress.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/crc32.c -o ZLIB/crc32.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/deflate.c -o ZLIB/deflate.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/infback.c -o ZLIB/infback.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/inffast.c -o ZLIB/inffast.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/inflate.c -o ZLIB/inflate.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/inftrees.c -o ZLIB/inftrees.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/trees.c -o ZLIB/trees.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/uncompr.c -o ZLIB/uncompr.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/zutil.c -o ZLIB/zutil.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c LZ4/lz4.c -o LZ4/lz4.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c LZ4/lz4hc.c -o LZ4/lz4hc.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c LZ4/lz4frame.c -o LZ4/lz4frame.o
/mingw32/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && unzip -q xz-5.2.4-win.zip
cp XZ/xz-5.2.4/i386/liblzma.a  .
/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dRealGDS.o CoreArray/dSerial.o CoreArray/dStrGDS.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dVLIntGDS.o CoreArray/dSparse.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o ./liblzma.a -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/gdsfmt.buildbin-libdir/00LOCK-gdsfmt/00new/gdsfmt/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gdsfmt'
    finding HTML links ... done
    add.gdsn                                html  
    addfile.gdsn                            html  
    addfolder.gdsn                          html  
    append.gdsn                             html  
    apply.gdsn                              html  
    assign.gdsn                             html  
    cache.gdsn                              html  
    cleanup.gds                             html  
    closefn.gds                             html  
    clusterApply.gdsn                       html  
    cnt.gdsn                                html  
    compression.gdsn                        html  
    copyto.gdsn                             html  
    createfn.gds                            html  
    delete.attr.gdsn                        html  
    delete.gdsn                             html  
    diagnosis.gds                           html  
    digest.gdsn                             html  
    gds.class                               html  
    gdsfmt-package                          html  
    gdsn.class                              html  
    get.attr.gdsn                           html  
    getfile.gdsn                            html  
    getfolder.gdsn                          html  
    index.gdsn                              html  
    is.element.gdsn                         html  
    lasterr.gds                             html  
    ls.gdsn                                 html  
    moveto.gdsn                             html  
    name.gdsn                               html  
    objdesp.gdsn                            html  
    openfn.gds                              html  
    permdim.gdsn                            html  
    print.gds.class                         html  
    put.attr.gdsn                           html  
    read.gdsn                               html  
    readex.gdsn                             html  
    readmode.gdsn                           html  
    rename.gdsn                             html  
    setdim.gdsn                             html  
    showfile.gds                            html  
    summarize.gdsn                          html  
    sync.gds                                html  
    system.gds                              html  
    unload.gdsn                             html  
    write.gdsn                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'gdsfmt' ...
** libs
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c R_CoreArray.cpp -o R_CoreArray.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c gdsfmt.cpp -o gdsfmt.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c digest.cpp -o digest.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/CoreArray.cpp -o CoreArray/CoreArray.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dAllocator.cpp -o CoreArray/dAllocator.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dAny.cpp -o CoreArray/dAny.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dBase.cpp -o CoreArray/dBase.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dBitGDS.cpp -o CoreArray/dBitGDS.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dEndian.cpp -o CoreArray/dEndian.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dFile.cpp -o CoreArray/dFile.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dParallel.cpp -o CoreArray/dParallel.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dParallel_Ext.c -o CoreArray/dParallel_Ext.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dPlatform.cpp -o CoreArray/dPlatform.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dRealGDS.cpp -o CoreArray/dRealGDS.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dSerial.cpp -o CoreArray/dSerial.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dStrGDS.cpp -o CoreArray/dStrGDS.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dStream.cpp -o CoreArray/dStream.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dStruct.cpp -o CoreArray/dStruct.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dVLIntGDS.cpp -o CoreArray/dVLIntGDS.o
/mingw64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c CoreArray/dSparse.cpp -o CoreArray/dSparse.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/adler32.c -o ZLIB/adler32.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/compress.c -o ZLIB/compress.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/crc32.c -o ZLIB/crc32.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/deflate.c -o ZLIB/deflate.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/infback.c -o ZLIB/infback.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/inffast.c -o ZLIB/inffast.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/inflate.c -o ZLIB/inflate.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/inftrees.c -o ZLIB/inftrees.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/trees.c -o ZLIB/trees.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/uncompr.c -o ZLIB/uncompr.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ZLIB/zutil.c -o ZLIB/zutil.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c LZ4/lz4.c -o LZ4/lz4.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c LZ4/lz4hc.c -o LZ4/lz4hc.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c LZ4/lz4frame.c -o LZ4/lz4frame.o
/mingw64/bin/gcc  -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG -DUSING_R -D_FILE_OFFSET_BITS=64 -I../inst/include -ICoreArray    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c LZ4/xxhash.c -o LZ4/xxhash.o
cd XZ && unzip -q xz-5.2.4-win.zip
cp XZ/xz-5.2.4/x64/liblzma.a  .
/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o gdsfmt.dll tmp.def R_CoreArray.o gdsfmt.o digest.o CoreArray/CoreArray.o CoreArray/dAllocator.o CoreArray/dAny.o CoreArray/dBase.o CoreArray/dBitGDS.o CoreArray/dEndian.o CoreArray/dFile.o CoreArray/dParallel.o CoreArray/dParallel_Ext.o CoreArray/dPlatform.o CoreArray/dRealGDS.o CoreArray/dSerial.o CoreArray/dStrGDS.o CoreArray/dStream.o CoreArray/dStruct.o CoreArray/dVLIntGDS.o CoreArray/dSparse.o ZLIB/adler32.o ZLIB/compress.o ZLIB/crc32.o ZLIB/deflate.o ZLIB/infback.o ZLIB/inffast.o ZLIB/inflate.o ZLIB/inftrees.o ZLIB/trees.o ZLIB/uncompr.o ZLIB/zutil.o LZ4/lz4.o LZ4/lz4hc.o LZ4/lz4frame.o LZ4/xxhash.o ./liblzma.a -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/gdsfmt.buildbin-libdir/gdsfmt/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gdsfmt' as gdsfmt_1.23.11.zip
* DONE (gdsfmt)
* installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library'
package 'gdsfmt' successfully unpacked and MD5 sums checked