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INSTALL report for fishpond on tokay2

This page was generated on 2020-04-15 03:20:14 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE fishpond PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 35/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fishpond 1.3.15
Michael Love
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/fishpond
Branch: master
Last Commit: 36a3cf7
Last Changed Date: 2020-04-04 08:35:15 -0400 (Sat, 04 Apr 2020)
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK 

Summary

Package: fishpond
Version: 1.3.15
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/fishpond_1.3.15.tar.gz && rm -rf fishpond.buildbin-libdir && mkdir fishpond.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fishpond.buildbin-libdir fishpond_1.3.15.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL fishpond_1.3.15.zip && rm fishpond_1.3.15.tar.gz fishpond_1.3.15.zip
StartedAt: 2020-04-14 18:19:28 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:20:16 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 48.2 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/fishpond_1.3.15.tar.gz && rm -rf fishpond.buildbin-libdir && mkdir fishpond.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fishpond.buildbin-libdir fishpond_1.3.15.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL fishpond_1.3.15.zip && rm fishpond_1.3.15.tar.gz fishpond_1.3.15.zip
###
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install for i386

* installing *source* package 'fishpond' ...
** using staged installation
** libs
/mingw32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
/mingw32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c readEDS.cpp -o readEDS.o
/mingw32/bin/g++ -shared -s -static-libgcc -o fishpond.dll tmp.def RcppExports.o readEDS.o -lz -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/fishpond.buildbin-libdir/00LOCK-fishpond/00new/fishpond/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fishpond'
    finding HTML links ... done
    computeInfRV                            html  
    deswish                                 html  
    fishpond-package                        html  
    isoformProportions                      html  
    labelKeep                               html  
    makeSimSwishData                        html  
    plotInfReps                             html  
    plotMASwish                             html  
    readEDS                                 html  
    scaleInfReps                            html  
    swish                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fishpond' ...
** libs
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
/mingw64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCTE~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c readEDS.cpp -o readEDS.o
/mingw64/bin/g++ -shared -s -static-libgcc -o fishpond.dll tmp.def RcppExports.o readEDS.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCTE~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/fishpond.buildbin-libdir/fishpond/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fishpond' as fishpond_1.3.15.zip
* DONE (fishpond)
* installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library'
package 'fishpond' successfully unpacked and MD5 sums checked