Back to "Blame Jeroen" build/check report for BioC 3.11

BUILD report for edgeR on tokay2

This page was generated on 2020-04-15 03:20:12 -0400 (Wed, 15 Apr 2020).

These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html)
TO THE DEVELOPERS/MAINTAINERS OF THE edgeR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 32/89HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
edgeR 3.29.1
Yunshun Chen , Aaron Lun , Mark Robinson , Gordon Smyth
Snapshot Date: 2020-04-14 17:00:05 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/edgeR
Branch: master
Last Commit: b9862cc
Last Changed Date: 2020-03-21 20:53:05 -0400 (Sat, 21 Mar 2020)
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 

Summary

Package: edgeR
Version: 3.29.1
Command: chmod a+r edgeR -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data edgeR
StartedAt: 2020-04-14 19:22:30 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:25:06 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 156.3 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r edgeR -R && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data edgeR
###
##############################################################################
##############################################################################


* checking for file 'edgeR/DESCRIPTION' ... OK
* preparing 'edgeR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'edgeR.Rnw' using Sweave
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "edgeR.tex" --max-iterations=20 -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/tex/latex" -I "C:/Users/bioctesting/bbs-3.11-bioc-testing/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'edgeR.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'edgeR.pdf' for vignette with name 'edgeR' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\bioctesting\bbs-3.11-bioc-testing\tmpdir\Rtmpgn1T9H\Rbuild140833711fd9\edgeR\vignettes': 'edgeR.Rnw' (1817 bytes), 'edgeR.tex' (1886 bytes)
--- failed re-building 'edgeR.Rnw'

SUMMARY: processing the following file failed:
  'edgeR.Rnw'

Error: Vignette re-building failed.
Execution halted