Back to "Blame Jeroen" build/check report for BioC 3.11 |
This page was generated on 2020-04-15 03:20:15 -0400 (Wed, 15 Apr 2020).
These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html) |
TO THE DEVELOPERS/MAINTAINERS OF THE basilisk PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 10/89 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
basilisk 0.99.61 Aaron Lun
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ ERROR ] | OK |
Package: basilisk |
Version: 0.99.61 |
Command: C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:basilisk.install-out.txt --library=C:\Users\bioctesting\bbs-3.11-bioc-testing\R\library --no-vignettes --timings basilisk_0.99.61.tar.gz |
StartedAt: 2020-04-14 22:56:23 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 23:29:43 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 2000.0 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: basilisk.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:basilisk.install-out.txt --library=C:\Users\bioctesting\bbs-3.11-bioc-testing\R\library --no-vignettes --timings basilisk_0.99.61.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/basilisk.Rcheck' * using R version 4.0.0 alpha (Rtools40) (2020-03-31 r78116) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'basilisk/DESCRIPTION' ... OK * this is package 'basilisk' version '0.99.61' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: inst/example/.BBSoptions These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'basilisk' can be installed ... NOTE Found the following notes/warnings: Non-staged installation was used See 'C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/basilisk.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE basiliskRun: no visible binding for global variable '.basilisk.fun' basiliskRun: no visible binding for global variable '.basilisk.args' Undefined global functions or variables: .basilisk.args .basilisk.fun * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking files in 'vignettes' ... OK * checking examples ... ERROR Running examples in 'basilisk-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: basiliskStart > ### Title: Start and stop 'basilisk'-related processes > ### Aliases: basiliskStart basiliskStop basiliskRun > > ### ** Examples > > # Loading the base environment: > cl <- basiliskStart(NULL) * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: six conda-forge/noarch::six-1.14.0-py_1 The following packages will be UPDATED: ca-certificates pkgs/main::ca-certificates-2020.1.1-0 --> conda-forge::ca-certificates-2020.4.5.1-hecc5488_0 The following packages will be SUPERSEDED by a higher-priority channel: certifi pkgs/main::certifi-2020.4.5.1-py37_0 --> conda-forge::certifi-2020.4.5.1-py37hc8dfbb8_0 openssl pkgs/main::openssl-1.1.1f-he774522_0 --> conda-forge::openssl-1.1.1f-hfa6e2cd_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 ERRORs, 3 NOTEs See 'C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/basilisk.Rcheck/00check.log' for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch basilisk ### ############################################################################## ############################################################################## * installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library' * installing *source* package 'basilisk' ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'basilisk' finding HTML links ... done BasiliskEnvironment-class html PyPiLink html basiliskOptions html basiliskStart html configureBasiliskEnv html findPersistentEnv html listCorePackages html setupBasiliskEnv html useBasiliskEnv html finding level-2 HTML links ... done ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk) Making 'packages.html' ... done
basilisk.Rcheck/tests/testthat.Rout.fail
R version 4.0.0 alpha (Rtools40) (2020-03-31 r78116) -- "Blame Jeroen" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(basilisk) > test_check("basilisk") -- 1. Failure: clearing out only obsolete versions works as expected (@test-clea file.exists(placeholder) isn't true. Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.7.12 latest version: 4.8.3 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: C:\Users\bioctesting\bbs-3.11-bioc-testing\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo added / updated specs: - python=3.7.4 The following packages will be downloaded: package | build ---------------------------|----------------- ca-certificates-2020.1.1 | 0 125 KB certifi-2020.4.5.1 | py37_0 156 KB openssl-1.1.1f | he774522_0 4.8 MB pip-20.0.2 | py37_1 1.7 MB setuptools-46.1.3 | py37_0 528 KB sqlite-3.31.1 | he774522_0 637 KB vs2015_runtime-14.16.27012 | hf0eaf9b_1 1.1 MB wheel-0.34.2 | py37_0 66 KB ------------------------------------------------------------ Total: 9.1 MB The following NEW packages will be INSTALLED: ca-certificates pkgs/main/win-64::ca-certificates-2020.1.1-0 certifi pkgs/main/win-64::certifi-2020.4.5.1-py37_0 openssl pkgs/main/win-64::openssl-1.1.1f-he774522_0 pip pkgs/main/win-64::pip-20.0.2-py37_1 python pkgs/main/win-64::python-3.7.4-h5263a28_0 setuptools pkgs/main/win-64::setuptools-46.1.3-py37_0 sqlite pkgs/main/win-64::sqlite-3.31.1-he774522_0 vc pkgs/main/win-64::vc-14.1-h0510ff6_4 vs2015_runtime pkgs/main/win-64::vs2015_runtime-14.16.27012-hf0eaf9b_1 wheel pkgs/main/win-64::wheel-0.34.2-py37_0 wincertstore pkgs/main/win-64::wincertstore-0.2-py37_0 Downloading and Extracting Packages wheel-0.34.2 | 66 KB | | 0% wheel-0.34.2 | 66 KB | ##4 | 24% wheel-0.34.2 | 66 KB | ########## | 100% openssl-1.1.1f | 4.8 MB | | 0% openssl-1.1.1f | 4.8 MB | ######2 | 63% openssl-1.1.1f | 4.8 MB | ########## | 100% pip-20.0.2 | 1.7 MB | | 0% pip-20.0.2 | 1.7 MB | ########## | 100% vs2015_runtime-14.16 | 1.1 MB | | 0% vs2015_runtime-14.16 | 1.1 MB | ########## | 100% ca-certificates-2020 | 125 KB | | 0% ca-certificates-2020 | 125 KB | ########## | 100% sqlite-3.31.1 | 637 KB | | 0% sqlite-3.31.1 | 637 KB | ########## | 100% setuptools-46.1.3 | 528 KB | | 0% setuptools-46.1.3 | 528 KB | ########## | 100% certifi-2020.4.5.1 | 156 KB | | 0% certifi-2020.4.5.1 | 156 KB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done # # To activate this environment, use # # $ conda activate C:\Users\bioctesting\bbs-3.11-bioc-testing\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo # # To deactivate an active environment, use # # $ conda deactivate Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.7.12 latest version: 4.8.3 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: C:\Users\bioctesting\bbs-3.11-bioc-testing\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo added / updated specs: - pandas=0.24.1 - python-dateutil=2.7.1 - python=3.7.4 - pytz=2018.7 The following packages will be downloaded: package | build ---------------------------|----------------- ca-certificates-2020.4.5.1 | hecc5488_0 184 KB conda-forge certifi-2020.4.5.1 | py37hc8dfbb8_0 150 KB conda-forge intel-openmp-2020.0 | 166 1.5 MB libblas-3.8.0 | 15_mkl 3.5 MB conda-forge libcblas-3.8.0 | 15_mkl 3.5 MB conda-forge liblapack-3.8.0 | 15_mkl 3.5 MB conda-forge mkl-2020.0 | 166 98.9 MB numpy-1.18.1 | py37h90d3380_1 4.7 MB conda-forge openssl-1.1.1f | hfa6e2cd_0 4.7 MB conda-forge pandas-0.24.1 | py37h6538335_0 9.4 MB conda-forge python-dateutil-2.7.1 | py_0 203 KB conda-forge python_abi-3.7 | 1_cp37m 4 KB conda-forge pytz-2018.7 | py_0 226 KB conda-forge six-1.14.0 | py_1 13 KB conda-forge ------------------------------------------------------------ Total: 130.7 MB The following NEW packages will be INSTALLED: intel-openmp pkgs/main/win-64::intel-openmp-2020.0-166 libblas conda-forge/win-64::libblas-3.8.0-15_mkl libcblas conda-forge/win-64::libcblas-3.8.0-15_mkl liblapack conda-forge/win-64::liblapack-3.8.0-15_mkl mkl pkgs/main/win-64::mkl-2020.0-166 numpy conda-forge/win-64::numpy-1.18.1-py37h90d3380_1 pandas conda-forge/win-64::pandas-0.24.1-py37h6538335_0 python-dateutil conda-forge/noarch::python-dateutil-2.7.1-py_0 python_abi conda-forge/win-64::python_abi-3.7-1_cp37m pytz conda-forge/noarch::pytz-2018.7-py_0 six conda-forge/noarch::six-1.14.0-py_1 The following packages will be UPDATED: ca-certificates pkgs/main::ca-certificates-2020.1.1-0 --> conda-forge::ca-certificates-2020.4.5.1-hecc5488_0 The following packages will be SUPERSEDED by a higher-priority channel: certifi pkgs/main::certifi-2020.4.5.1-py37_0 --> conda-forge::certifi-2020.4.5.1-py37hc8dfbb8_0 openssl pkgs/main::openssl-1.1.1f-he774522_0 --> conda-forge::openssl-1.1.1f-hfa6e2cd_0 Downloading and Extracting Packages six-1.14.0 | 13 KB | | 0% six-1.14.0 | 13 KB | ########## | 100% python_abi-3.7 | 4 KB | | 0% python_abi-3.7 | 4 KB | ########## | 100% pandas-0.24.1 | 9.4 MB | | 0% pandas-0.24.1 | 9.4 MB | | 0% pandas-0.24.1 | 9.4 MB | 3 | 3% pandas-0.24.1 | 9.4 MB | ### | 30% pandas-0.24.1 | 9.4 MB | ######2 | 63% pandas-0.24.1 | 9.4 MB | ########## | 100% python-dateutil-2.7. | 203 KB | | 0% python-dateutil-2.7. | 203 KB | ########## | 100% libcblas-3.8.0 | 3.5 MB | | 0% libcblas-3.8.0 | 3.5 MB | ####2 | 43% libcblas-3.8.0 | 3.5 MB | ########## | 100% liblapack-3.8.0 | 3.5 MB | | 0% liblapack-3.8.0 | 3.5 MB | ######7 | 68% liblapack-3.8.0 | 3.5 MB | ########## | 100% pytz-2018.7 | 226 KB | | 0% pytz-2018.7 | 226 KB | ########## | 100% certifi-2020.4.5.1 | 150 KB | | 0% certifi-2020.4.5.1 | 150 KB | ########## | 100% ca-certificates-2020 | 184 KB | | 0% ca-certificates-2020 | 184 KB | ########## | 100% intel-openmp-2020.0 | 1.5 MB | | 0% intel-openmp-2020.0 | 1.5 MB | 1 | 1% intel-openmp-2020.0 | 1.5 MB | ########## | 100% openssl-1.1.1f | 4.7 MB | | 0% openssl-1.1.1f | 4.7 MB | ##7 | 28% openssl-1.1.1f | 4.7 MB | ########## | 100% numpy-1.18.1 | 4.7 MB | | 0% numpy-1.18.1 | 4.7 MB | ###6 | 37% numpy-1.18.1 | 4.7 MB | ########## | 100% mkl-2020.0 | 98.9 MB | | 0% mkl-2020.0 | 98.9 MB | 3 | 3% mkl-2020.0 | 98.9 MB | #1 | 12% mkl-2020.0 | 98.9 MB | ##1 | 22% mkl-2020.0 | 98.9 MB | ###1 | 31% mkl-2020.0 | 98.9 MB | #### | 41% mkl-2020.0 | 98.9 MB | #####2 | 52% mkl-2020.0 | 98.9 MB | ######3 | 64% mkl-2020.0 | 98.9 MB | #######3 | 74% mkl-2020.0 | 98.9 MB | ########3 | 84% mkl-2020.0 | 98.9 MB | #########3 | 94% mkl-2020.0 | 98.9 MB | ########## | 100% libblas-3.8.0 | 3.5 MB | | 0% libblas-3.8.0 | 3.5 MB | #########8 | 98% libblas-3.8.0 | 3.5 MB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.7.12 latest version: 4.8.3 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: C:\Users\bioctesting\bbs-3.11-bioc-testing\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo added / updated specs: - python=2.7 The following packages will be downloaded: package | build ---------------------------|----------------- certifi-2019.11.28 | py27_0 153 KB pip-19.3.1 | py27_0 1.7 MB python-2.7.17 | h930f6bb_0 15.9 MB setuptools-44.0.0 | py27_0 528 KB sqlite-3.30.1 | h0c8e037_0 588 KB vc-9 | h7299396_1 3 KB vs2008_runtime-9.00.30729.1| hfaea7d5_1 500 KB wheel-0.33.6 | py27_0 58 KB wincertstore-0.2 | py27hf04cefb_0 14 KB ------------------------------------------------------------ Total: 19.4 MB The following NEW packages will be INSTALLED: ca-certificates pkgs/main/win-64::ca-certificates-2020.1.1-0 certifi pkgs/main/win-64::certifi-2019.11.28-py27_0 pip pkgs/main/win-64::pip-19.3.1-py27_0 python pkgs/main/win-64::python-2.7.17-h930f6bb_0 setuptools pkgs/main/win-64::setuptools-44.0.0-py27_0 sqlite pkgs/main/win-64::sqlite-3.30.1-h0c8e037_0 vc pkgs/main/win-64::vc-9-h7299396_1 vs2008_runtime pkgs/main/win-64::vs2008_runtime-9.00.30729.1-hfaea7d5_1 wheel pkgs/main/win-64::wheel-0.33.6-py27_0 wincertstore pkgs/main/win-64::wincertstore-0.2-py27hf04cefb_0 Downloading and Extracting Packages vc-9 | 3 KB | | 0% vc-9 | 3 KB | ########## | 100% vs2008_runtime-9.00. | 500 KB | | 0% vs2008_runtime-9.00. | 500 KB | ########## | 100% python-2.7.17 | 15.9 MB | | 0% python-2.7.17 | 15.9 MB | #6 | 17% python-2.7.17 | 15.9 MB | #####8 | 59% python-2.7.17 | 15.9 MB | ########## | 100% setuptools-44.0.0 | 528 KB | | 0% setuptools-44.0.0 | 528 KB | ########## | 100% sqlite-3.30.1 | 588 KB | | 0% sqlite-3.30.1 | 588 KB | ########## | 100% certifi-2019.11.28 | 153 KB | | 0% certifi-2019.11.28 | 153 KB | ########## | 100% wincertstore-0.2 | 14 KB | | 0% wincertstore-0.2 | 14 KB | ########## | 100% pip-19.3.1 | 1.7 MB | | 0% pip-19.3.1 | 1.7 MB | ########## | 100% wheel-0.33.6 | 58 KB | | 0% wheel-0.33.6 | 58 KB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done # # To activate this environment, use # # $ conda activate C:\Users\bioctesting\bbs-3.11-bioc-testing\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo # # To deactivate an active environment, use # # $ conda deactivate Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.7.12 latest version: 4.8.3 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: C:\Users\bioctesting\bbs-3.11-bioc-testing\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo added / updated specs: - python[version='2.7.*,2.7.*'] The following packages will be downloaded: package | build ---------------------------|----------------- python-2.7.15 |h2880e7c_1011_cpython 20.3 MB conda-forge python_abi-2.7 | 1_cp27m 4 KB conda-forge ------------------------------------------------------------ Total: 20.3 MB The following NEW packages will be INSTALLED: python_abi conda-forge/win-64::python_abi-2.7-1_cp27m The following packages will be UPDATED: ca-certificates pkgs/main::ca-certificates-2020.1.1-0 --> conda-forge::ca-certificates-2020.4.5.1-hecc5488_0 The following packages will be SUPERSEDED by a higher-priority channel: python pkgs/main::python-2.7.17-h930f6bb_0 --> conda-forge::python-2.7.15-h2880e7c_1011_cpython Downloading and Extracting Packages python_abi-2.7 | 4 KB | | 0% python_abi-2.7 | 4 KB | ########## | 100% python-2.7.15 | 20.3 MB | | 0% python-2.7.15 | 20.3 MB | 6 | 6% python-2.7.15 | 20.3 MB | ##8 | 28% python-2.7.15 | 20.3 MB | #####9 | 59% python-2.7.15 | 20.3 MB | #########6 | 97% python-2.7.15 | 20.3 MB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.7.12 latest version: 4.8.3 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: C:\Users\bioctesting\bbs-3.11-bioc-testing\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo added / updated specs: - python=3.7.4 The following NEW packages will be INSTALLED: ca-certificates pkgs/main/win-64::ca-certificates-2020.1.1-0 certifi pkgs/main/win-64::certifi-2020.4.5.1-py37_0 openssl pkgs/main/win-64::openssl-1.1.1f-he774522_0 pip pkgs/main/win-64::pip-20.0.2-py37_1 python pkgs/main/win-64::python-3.7.4-h5263a28_0 setuptools pkgs/main/win-64::setuptools-46.1.3-py37_0 sqlite pkgs/main/win-64::sqlite-3.31.1-he774522_0 vc pkgs/main/win-64::vc-14.1-h0510ff6_4 vs2015_runtime pkgs/main/win-64::vs2015_runtime-14.16.27012-hf0eaf9b_1 wheel pkgs/main/win-64::wheel-0.34.2-py37_0 wincertstore pkgs/main/win-64::wincertstore-0.2-py37_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done # # To activate this environment, use # # $ conda activate C:\Users\bioctesting\bbs-3.11-bioc-testing\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo # # To deactivate an active environment, use # # $ conda deactivate Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.7.12 latest version: 4.8.3 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: C:\Users\bioctesting\bbs-3.11-bioc-testing\meat\basilisk.Rcheck\tests\testthat\install-test-client\thingo added / updated specs: - python-dateutil=2.7.1 - python=3.7.4 - pytz=2018.7 The following NEW packages will be INSTALLED: python-dateutil conda-forge/noarch::python-dateutil-2.7.1-py_0 python_abi conda-forge/win-64::python_abi-3.7-1_cp37m pytz conda-forge/noarch::pytz-2018.7-py_0 six conda-forge/noarch::six-1.14.0-py_1 The following packages will be UPDATED: ca-certificates pkgs/main::ca-certificates-2020.1.1-0 --> conda-forge::ca-certificates-2020.4.5.1-hecc5488_0 The following packages will be SUPERSEDED by a higher-priority channel: certifi pkgs/main::certifi-2020.4.5.1-py37_0 --> conda-forge::certifi-2020.4.5.1-py37hc8dfbb8_0 openssl pkgs/main::openssl-1.1.1f-he774522_0 --> conda-forge::openssl-1.1.1f-hfa6e2cd_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting pandas==0.24.1 Using cached pandas-0.24.1-cp37-cp37m-win_amd64.whl (9.0 MB) Requirement already satisfied: python-dateutil>=2.5.0 in c:\users\biocte~1\bbs-3~1.11-\meat\basili~2.rch\tests\testthat\instal~1\thingo\lib\site-packages (from pandas==0.24.1) (2.7.1) Requirement already satisfied: pytz>=2011k in c:\users\biocte~1\bbs-3~1.11-\meat\basili~2.rch\tests\testthat\instal~1\thingo\lib\site-packages (from pandas==0.24.1) (2018.7) Collecting numpy>=1.12.0 Using cached numpy-1.18.2-cp37-cp37m-win_amd64.whl (12.8 MB) Requirement already satisfied: six>=1.5 in c:\users\biocte~1\bbs-3~1.11-\meat\basili~2.rch\tests\testthat\instal~1\thingo\lib\site-packages (from python-dateutil>=2.5.0->pandas==0.24.1) (1.14.0) Installing collected packages: numpy, pandas WARNING: The script f2py.exe is installed in 'C:\Users\BIOCTE~1\BBS-3~1.11-\meat\BASILI~2.RCH\tests\testthat\INSTAL~1\thingo\Scripts' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. Successfully installed numpy-1.18.2 pandas-0.24.1 * installing *source* package 'son.of.basilisk' ... ** using non-staged installation via StagedInstall field ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'son.of.basilisk' finding HTML links ... done test html ** building package indices ** testing if installed package can be loaded *** arch - i386 *** arch - x64 * DONE (son.of.basilisk) Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.7.12 latest version: 4.8.3 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: C:\Users\bioctesting\AppData\Local\basilisk\0.99.61\son.of.basilisk-0.99.0\env1 added / updated specs: - python=3.7.4 The following NEW packages will be INSTALLED: ca-certificates pkgs/main/win-64::ca-certificates-2020.1.1-0 certifi pkgs/main/win-64::certifi-2020.4.5.1-py37_0 openssl pkgs/main/win-64::openssl-1.1.1f-he774522_0 pip pkgs/main/win-64::pip-20.0.2-py37_1 python pkgs/main/win-64::python-3.7.4-h5263a28_0 setuptools pkgs/main/win-64::setuptools-46.1.3-py37_0 sqlite pkgs/main/win-64::sqlite-3.31.1-he774522_0 vc pkgs/main/win-64::vc-14.1-h0510ff6_4 vs2015_runtime pkgs/main/win-64::vs2015_runtime-14.16.27012-hf0eaf9b_1 wheel pkgs/main/win-64::wheel-0.34.2-py37_0 wincertstore pkgs/main/win-64::wincertstore-0.2-py37_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done # # To activate this environment, use # # $ conda activate C:\Users\bioctesting\AppData\Local\basilisk\0.99.61\son.of.basilisk-0.99.0\env1 # # To deactivate an active environment, use # # $ conda deactivate Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.7.12 latest version: 4.8.3 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: C:\Users\bioctesting\AppData\Local\basilisk\0.99.61\son.of.basilisk-0.99.0\env1 added / updated specs: - pandas=0.24.1 - python-dateutil=2.7.1 - python=3.7.4 - pytz=2018.7 The following NEW packages will be INSTALLED: intel-openmp pkgs/main/win-64::intel-openmp-2020.0-166 libblas conda-forge/win-64::libblas-3.8.0-15_mkl libcblas conda-forge/win-64::libcblas-3.8.0-15_mkl liblapack conda-forge/win-64::liblapack-3.8.0-15_mkl mkl pkgs/main/win-64::mkl-2020.0-166 numpy conda-forge/win-64::numpy-1.18.1-py37h90d3380_1 pandas conda-forge/win-64::pandas-0.24.1-py37h6538335_0 python-dateutil conda-forge/noarch::python-dateutil-2.7.1-py_0 python_abi conda-forge/win-64::python_abi-3.7-1_cp37m pytz conda-forge/noarch::pytz-2018.7-py_0 six conda-forge/noarch::six-1.14.0-py_1 The following packages will be UPDATED: ca-certificates pkgs/main::ca-certificates-2020.1.1-0 --> conda-forge::ca-certificates-2020.4.5.1-hecc5488_0 The following packages will be SUPERSEDED by a higher-priority channel: certifi pkgs/main::certifi-2020.4.5.1-py37_0 --> conda-forge::certifi-2020.4.5.1-py37hc8dfbb8_0 openssl pkgs/main::openssl-1.1.1f-he774522_0 --> conda-forge::openssl-1.1.1f-hfa6e2cd_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done
basilisk.Rcheck/basilisk-Ex.timings
name | user | system | elapsed | |
BasiliskEnvironment-class | 0 | 0 | 0 | |
PyPiLink | 0 | 0 | 0 | |
basiliskOptions | 0 | 0 | 0 | |