| Back to Multiple platform build/check report for BioC 3.11 (small subset of software packages ONLY) |
This page was generated on 2020-01-24 03:57:03 -0500 (Fri, 24 Jan 2020).
| Package 1/41 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| affy 1.65.1 Rafael A. Irizarry
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | [ OK ] | OK | WARNINGS | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK |
| Package: affy |
| Version: 1.65.1 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL affy |
| StartedAt: 2020-01-24 01:57:46 -0500 (Fri, 24 Jan 2020) |
| EndedAt: 2020-01-24 01:57:58 -0500 (Fri, 24 Jan 2020) |
| EllapsedTime: 12.0 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL affy ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc-testing/Rlibs’ * installing *source* package ‘affy’ ... ** using staged installation creating cache ./config.cache checking how to run the C preprocessor... cc -E checking for main in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/preprocessCore/include' -I/usr/local/include -fpic -g -O2 -Wall -c chipbackground.c -o chipbackground.o gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/preprocessCore/include' -I/usr/local/include -fpic -g -O2 -Wall -c getall_locations.c -o getall_locations.o gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/preprocessCore/include' -I/usr/local/include -fpic -g -O2 -Wall -c mas5calls.c -o mas5calls.o gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/preprocessCore/include' -I/usr/local/include -fpic -g -O2 -Wall -c rma2.c -o rma2.o gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/biocbuild/bbs-3.11-bioc-testing/Rlibs/preprocessCore/include' -I/usr/local/include -fpic -g -O2 -Wall -c rma_common.c -o rma_common.o gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.11-bioc-testing/Rlibs/00LOCK-affy/00new/affy/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affy)