| Back to "Blame Jeroen" build/check report for BioC 3.11 |
This page was generated on 2020-04-15 03:20:10 -0400 (Wed, 15 Apr 2020).
| These builds are using Rtools40 and R-testing by Jeroen Ooms (available at https://cran.r-project.org/bin/windows/testing/rtools40.html) |
| TO THE DEVELOPERS/MAINTAINERS OF THE BiocFileCache PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 14/89 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| BiocFileCache 1.11.5 Lori Shepherd
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK |
| Package: BiocFileCache |
| Version: 1.11.5 |
| Command: C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD check --force-multiarch --install=check:BiocFileCache.install-out.txt --library=C:\Users\bioctesting\bbs-3.11-bioc-testing\R\library --no-vignettes --timings BiocFileCache_1.11.5.tar.gz |
| StartedAt: 2020-04-14 21:49:43 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 21:52:46 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 182.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: BiocFileCache.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD check --force-multiarch --install=check:BiocFileCache.install-out.txt --library=C:\Users\bioctesting\bbs-3.11-bioc-testing\R\library --no-vignettes --timings BiocFileCache_1.11.5.tar.gz
###
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* using log directory 'C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/BiocFileCache.Rcheck'
* using R version 4.0.0 alpha (Rtools40) (2020-03-31 r78116)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BiocFileCache/DESCRIPTION' ... OK
* this is package 'BiocFileCache' version '1.11.5'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BiocFileCache' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.get_all_web_rids: no visible binding for global variable 'rtype'
.sql_clean_cache: no visible binding for global variable 'rid'
.sql_clean_cache: no visible binding for global variable 'access_time'
.sql_get_field: no visible binding for global variable 'rid'
.sql_get_resource_table: no visible binding for global variable 'rid'
.sql_get_resource_table: no visible binding for global variable 'id'
Undefined global functions or variables:
access_time id rid rtype
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
BiocFileCache-class 4.26 0.12 5.86
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
BiocFileCache-class 4.28 0.17 5.72
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/bioctesting/bbs-3.11-bioc-testing/meat/BiocFileCache.Rcheck/00check.log'
for details.
BiocFileCache.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc-testing/src/contrib/BiocFileCache_1.11.5.tar.gz && rm -rf BiocFileCache.buildbin-libdir && mkdir BiocFileCache.buildbin-libdir && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocFileCache.buildbin-libdir BiocFileCache_1.11.5.tar.gz && C:\Users\bioctesting\bbs-3.11-bioc-testing\R\bin\R.exe CMD INSTALL BiocFileCache_1.11.5.zip && rm BiocFileCache_1.11.5.tar.gz BiocFileCache_1.11.5.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 46415 100 46415 0 0 806k 0 --:--:-- --:--:-- --:--:-- 906k
install for i386
* installing *source* package 'BiocFileCache' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BiocFileCache'
finding HTML links ... done
BiocFileCache-class html
makeBiocFileCacheFromDataFrame html
makeCachedActiveBinding html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BiocFileCache' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocFileCache' as BiocFileCache_1.11.5.zip
* DONE (BiocFileCache)
* installing to library 'C:/Users/bioctesting/bbs-3.11-bioc-testing/R/library'
package 'BiocFileCache' successfully unpacked and MD5 sums checked
|
BiocFileCache.Rcheck/tests_i386/testthat.Rout
R version 4.0.0 alpha (Rtools40) (2020-03-31 r78116) -- "Blame Jeroen"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(BiocFileCache)
Loading required package: dbplyr
>
> test_check("BiocFileCache")
adding: BiocFileCacheExport/ (stored 0%)
adding: BiocFileCacheExport/1e445c2e506_file1e446f43d12 (stored 0%)
adding: BiocFileCacheExport/BiocFileCache.sqlite (deflated 96%)
adding: BiocFileCacheExport/file1e446f43d12 (stored 0%)
== testthat results ===========================================================
[ OK: 254 | SKIPPED: 0 | WARNINGS: 6 | FAILED: 0 ]
>
> proc.time()
user system elapsed
33.26 1.45 39.89
|
BiocFileCache.Rcheck/tests_x64/testthat.Rout
R version 4.0.0 alpha (Rtools40) (2020-03-31 r78116) -- "Blame Jeroen"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(BiocFileCache)
Loading required package: dbplyr
>
> test_check("BiocFileCache")
adding: BiocFileCacheExport/ (stored 0%)
adding: BiocFileCacheExport/98c68f57628_file98c447ba8e (stored 0%)
adding: BiocFileCacheExport/BiocFileCache.sqlite (deflated 96%)
adding: BiocFileCacheExport/file98c447ba8e (stored 0%)
== testthat results ===========================================================
[ OK: 254 | SKIPPED: 0 | WARNINGS: 6 | FAILED: 0 ]
>
> proc.time()
user system elapsed
36.67 1.43 42.64
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BiocFileCache.Rcheck/examples_i386/BiocFileCache-Ex.timings
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BiocFileCache.Rcheck/examples_x64/BiocFileCache-Ex.timings
|