Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:00 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE vasp PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1868/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
vasp 1.0.0 Huihui Yu
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | NA | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: vasp |
Version: 1.0.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:vasp.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings vasp_1.0.0.tar.gz |
StartedAt: 2020-10-17 06:23:37 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 06:28:59 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 322.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: vasp.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:vasp.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings vasp_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/vasp.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘vasp/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘vasp’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘vasp’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Authors@R field gives more than one person with maintainer role: Huihui Yu <yuhuihui2011@foxmail.com> [aut, cre] Qian Du [aut, cre] * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.11-bioc/meat/vasp.Rcheck/00check.log’ for details.
vasp.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL vasp ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘vasp’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘vasp.Rmd’ using ‘UTF-8’ ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vasp)
vasp.Rcheck/vasp-Ex.timings
name | user | system | elapsed | |
BMfinder | 0.037 | 0.000 | 0.089 | |
getDepth | 0.631 | 0.004 | 0.778 | |
getGeneinfo | 0.474 | 0.000 | 0.475 | |
rice.bg | 0.005 | 0.000 | 0.004 | |
spliceGene | 0.077 | 0.000 | 0.078 | |
spliceGenome | 0.093 | 0.000 | 0.093 | |
splicePlot | 3.226 | 0.072 | 3.497 | |