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INSTALL report for seqCNA on tokay2

This page was generated on 2020-10-17 11:57:47 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE seqCNA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1628/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqCNA 1.34.0
David Mosen-Ansorena
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/seqCNA
Branch: RELEASE_3_11
Last Commit: b37683d
Last Changed Date: 2020-04-27 14:35:21 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: seqCNA
Version: 1.34.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/seqCNA_1.34.0.tar.gz && rm -rf seqCNA.buildbin-libdir && mkdir seqCNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqCNA.buildbin-libdir seqCNA_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL seqCNA_1.34.0.zip && rm seqCNA_1.34.0.tar.gz seqCNA_1.34.0.zip
StartedAt: 2020-10-16 17:02:23 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:03:11 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 47.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/seqCNA_1.34.0.tar.gz && rm -rf seqCNA.buildbin-libdir && mkdir seqCNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqCNA.buildbin-libdir seqCNA_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL seqCNA_1.34.0.zip && rm seqCNA_1.34.0.tar.gz seqCNA_1.34.0.zip
###
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install for i386

* installing *source* package 'seqCNA' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c seqCNA.cpp -o seqCNA.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o seqCNA.dll tmp.def seqCNA.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/seqCNA.buildbin-libdir/00LOCK-seqCNA/00new/seqCNA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'seqCNA'
    finding HTML links ... done
    SeqCNAInfo-class                        html  
    applyFilters                            html  
    applyThresholds                         html  
    plotCNProfile                           html  
    readSeqsumm                             html  
    runGLAD                                 html  
    runSeqnorm                              html  
    runSeqsumm                              html  
    seqCNA-package                          html  
    seqsumm_HCC1143                         html  
    writeCNProfile                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'seqCNA' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c seqCNA.cpp -o seqCNA.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o seqCNA.dll tmp.def seqCNA.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/seqCNA.buildbin-libdir/seqCNA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqCNA' as seqCNA_1.34.0.zip
* DONE (seqCNA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'seqCNA' successfully unpacked and MD5 sums checked