Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:46 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE scone PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1603/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
scone 1.12.0 Davide Risso
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: scone |
Version: 1.12.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/scone_1.12.0.tar.gz && rm -rf scone.buildbin-libdir && mkdir scone.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scone.buildbin-libdir scone_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL scone_1.12.0.zip && rm scone_1.12.0.tar.gz scone_1.12.0.zip |
StartedAt: 2020-10-16 19:27:14 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 19:29:13 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 118.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/scone_1.12.0.tar.gz && rm -rf scone.buildbin-libdir && mkdir scone.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scone.buildbin-libdir scone_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL scone_1.12.0.zip && rm scone_1.12.0.tar.gz scone_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 107k 100 107k 0 0 1775k 0 --:--:-- --:--:-- --:--:-- 1957k install for i386 * installing *source* package 'scone' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scone' finding HTML links ... done CLR_FN html DESEQ_FN html FQ_FN html SCRAN_FN html SUM_FN html SconeExperiment-class html finding level-2 HTML links ... done TMM_FN html UQ_FN html biplot_color html biplot_interactive html control_genes html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmYmtMn/R.INSTALL2ec04f8b52ec/scone/man/control_genes.Rd:28: file link 'toupper' in package 'base' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmYmtMn/R.INSTALL2ec04f8b52ec/scone/man/control_genes.Rd:29: file link 'tolower' in package 'base' does not exist and so has been treated as a topic estimate_ziber html factor_sample_filter html fast_estimate_ziber html get_bio html get_design html get_negconruv html get_normalized html get_params html get_qc html get_scores html impute_expectation html impute_null html lm_adjust html make_design html metric_sample_filter html scone html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmYmtMn/R.INSTALL2ec04f8b52ec/scone/man/scone.Rd:101: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic sconeReport html scone_easybake html score_matrix html select_methods html simple_FNR_params html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'scone' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'scone' as scone_1.12.0.zip * DONE (scone) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'scone' successfully unpacked and MD5 sums checked