Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:45 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE scater PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1584/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
scater 1.16.2 Davis McCarthy
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: scater |
Version: 1.16.2 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scater.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings scater_1.16.2.tar.gz |
StartedAt: 2020-10-17 07:57:49 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 08:22:41 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 1492.5 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: scater.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scater.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings scater_1.16.2.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/scater.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'scater/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'scater' version '1.16.2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'scater' can be installed ... WARNING Found the following significant warnings: Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/plotReducedDim.Rd:33: file link 'plotPCA' in package 'scater' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runDiffusionMap.Rd:42: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runDiffusionMap.Rd:77: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runDiffusionMap.Rd:78: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runDiffusionMap.Rd:147: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runDiffusionMap.Rd:149: file link 'plotDiffusionMap' in package 'scater' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runMDS.Rd:143: file link 'plotMDS' in package 'scater' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runPCA.Rd:153: file link 'plotPCA' in package 'scater' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runTSNE.Rd:109: file link 'Rtsne_neighbors' in package 'Rtsne' does not exist and so has been treated as a topic See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/scater.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'NMF' in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.11-bioc/R/library/scater/libs/i386/scater.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) File 'C:/Users/biocbuild/bbs-3.11-bioc/R/library/scater/libs/x64/scater.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed runNMF 11.14 0.72 11.86 plotScater 5.36 0.28 5.64 runMultiUMAP 5.58 0.00 5.57 plot_reddim 5.28 0.22 5.50 plotRLE 5.01 0.22 5.23 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed runNMF 11.94 1.74 13.67 plot_reddim 7.53 0.10 7.62 plotScater 7.22 0.35 7.57 plotRLE 7.02 0.26 7.28 runMultiUMAP 5.92 0.03 5.95 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/scater.Rcheck/00check.log' for details.
scater.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/scater_1.16.2.tar.gz && rm -rf scater.buildbin-libdir && mkdir scater.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scater.buildbin-libdir scater_1.16.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL scater_1.16.2.zip && rm scater_1.16.2.tar.gz scater_1.16.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1123k 100 1123k 0 0 16.7M 0 --:--:-- --:--:-- --:--:-- 18.6M install for i386 * installing *source* package 'scater' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c combined_qc.cpp -o combined_qc.o combined_qc.cpp: In function 'void check_topset(const IntegerVector&)': combined_qc.cpp:14:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for (size_t t=1; t<top.size(); ++t) { ~^~~~~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sum_counts.cpp -o sum_counts.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o scater.dll tmp.def RcppExports.o combined_qc.o sum_counts.o utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/scater.buildbin-libdir/00LOCK-scater/00new/scater/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scater' finding HTML links ... done SCESet html accessors html finding level-2 HTML links ... done addPerCellQC html annotateBMFeatures html bootstraps html calculateAverage html calculateCPM html calculateFPKM html calculateTPM html defunct html getExplanatoryPCs html getVarianceExplained html ggsce html isOutlier html librarySizeFactors html logNormCounts html makePerCellDF html makePerFeatureDF html medianSizeFactors html mockSCE html multiplot html nexprs html normalizeCounts html numDetectedAcrossCells html numDetectedAcrossFeatures html perCellQCMetrics html perFeatureQCMetrics html plotColData html plotDots html plotExplanatoryPCs html plotExplanatoryVariables html plotExpression html plotHeatmap html plotHighestExprs html plotPlatePosition html plotRLE html plotReducedDim html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/plotReducedDim.Rd:33: file link 'plotPCA' in package 'scater' does not exist and so has been treated as a topic plotRowData html plotScater html plot_reddim html quickPerCellQC html readSparseCounts html retrieveCellInfo html retrieveFeatureInfo html runColDataPCA html runDiffusionMap html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runDiffusionMap.Rd:42: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runDiffusionMap.Rd:77: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runDiffusionMap.Rd:78: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runDiffusionMap.Rd:147: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runDiffusionMap.Rd:149: file link 'plotDiffusionMap' in package 'scater' does not exist and so has been treated as a topic runMDS html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runMDS.Rd:143: file link 'plotMDS' in package 'scater' does not exist and so has been treated as a topic runMultiUMAP html runNMF html runPCA html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runPCA.Rd:153: file link 'plotPCA' in package 'scater' does not exist and so has been treated as a topic runTSNE html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqSuaEc/R.INSTALL23e833725752/scater/man/runTSNE.Rd:109: file link 'Rtsne_neighbors' in package 'Rtsne' does not exist and so has been treated as a topic runUMAP html scater-plot-args html scater-utils html sumCountsAcrossCells html sumCountsAcrossFeatures html toSingleCellExperiment html uniquifyFeatureNames html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'scater' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c combined_qc.cpp -o combined_qc.o combined_qc.cpp: In function 'void check_topset(const IntegerVector&)': combined_qc.cpp:14:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] for (size_t t=1; t<top.size(); ++t) { ~^~~~~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sum_counts.cpp -o sum_counts.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o scater.dll tmp.def RcppExports.o combined_qc.o sum_counts.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/scater.buildbin-libdir/scater/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'scater' as scater_1.16.2.zip * DONE (scater) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'scater' successfully unpacked and MD5 sums checked
scater.Rcheck/tests_i386/testthat.Rout R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > Sys.setenv("R_TESTS" = "") > library(testthat) > library(scater) Loading required package: SingleCellExperiment Loading required package: SummarizedExperiment Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Loading required package: S4Vectors Attaching package: 'S4Vectors' The following object is masked from 'package:base': expand.grid Loading required package: IRanges Attaching package: 'IRanges' The following object is masked from 'package:grDevices': windows Loading required package: GenomeInfoDb Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: DelayedArray Loading required package: matrixStats Attaching package: 'matrixStats' The following objects are masked from 'package:Biobase': anyMissing, rowMedians Attaching package: 'DelayedArray' The following objects are masked from 'package:matrixStats': colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges The following objects are masked from 'package:base': aperm, apply, rowsum Loading required package: ggplot2 > > test_check("scater") == testthat results =========================================================== [ OK: 1804 | SKIPPED: 2 | WARNINGS: 11 | FAILED: 0 ] > > proc.time() user system elapsed 306.31 14.20 537.45 |
scater.Rcheck/tests_x64/testthat.Rout R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > Sys.setenv("R_TESTS" = "") > library(testthat) > library(scater) Loading required package: SingleCellExperiment Loading required package: SummarizedExperiment Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Loading required package: S4Vectors Attaching package: 'S4Vectors' The following object is masked from 'package:base': expand.grid Loading required package: IRanges Attaching package: 'IRanges' The following object is masked from 'package:grDevices': windows Loading required package: GenomeInfoDb Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: DelayedArray Loading required package: matrixStats Attaching package: 'matrixStats' The following objects are masked from 'package:Biobase': anyMissing, rowMedians Attaching package: 'DelayedArray' The following objects are masked from 'package:matrixStats': colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges The following objects are masked from 'package:base': aperm, apply, rowsum Loading required package: ggplot2 > > test_check("scater") == testthat results =========================================================== [ OK: 1804 | SKIPPED: 2 | WARNINGS: 11 | FAILED: 0 ] > > proc.time() user system elapsed 268.28 12.23 488.53 |
scater.Rcheck/examples_i386/scater-Ex.timings
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scater.Rcheck/examples_x64/scater-Ex.timings
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