Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:41 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE scClassify PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1587/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
scClassify 1.0.0 Yingxin Lin
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: scClassify |
Version: 1.0.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:scClassify.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings scClassify_1.0.0.tar.gz |
StartedAt: 2020-10-17 05:10:50 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 05:15:30 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 279.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: scClassify.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:scClassify.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings scClassify_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/scClassify.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘scClassify/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘scClassify’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘scClassify’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed runSampleCal 88.718 0.780 90.784 predict_scClassifyJoint 23.832 0.048 23.614 scClassify 14.122 0.052 14.416 predict_scClassify 10.733 0.273 10.634 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
scClassify.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL scClassify ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘scClassify’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scClassify)
scClassify.Rcheck/scClassify-Ex.timings
name | user | system | elapsed | |
cellTypeTrain | 0.149 | 0.008 | 0.156 | |
cellTypeTree | 0.127 | 0.016 | 0.143 | |
features | 0.132 | 0.008 | 0.140 | |
getN | 0.223 | 0.008 | 0.232 | |
learningCurve | 0.228 | 0.004 | 0.232 | |
model | 0.967 | 0.251 | 1.338 | |
modelweights | 0.128 | 0.008 | 0.137 | |
name | 0.129 | 0.012 | 0.140 | |
plotCellTypeTree | 0.778 | 0.008 | 0.805 | |
predict_scClassify | 10.733 | 0.273 | 10.634 | |
predict_scClassifyJoint | 23.832 | 0.048 | 23.614 | |
runHOPACH | 1.012 | 0.004 | 1.086 | |
runSampleCal | 88.718 | 0.780 | 90.784 | |
scClassify | 14.122 | 0.052 | 14.416 | |
scClassifyTrainModelList | 0.211 | 0.007 | 0.219 | |
train_scClassify | 2.623 | 0.080 | 2.938 | |