Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:35 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE ribor PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1488/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ribor 1.0.0 Michael Geng
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: ribor |
Version: 1.0.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:ribor.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings ribor_1.0.0.tar.gz |
StartedAt: 2020-10-17 04:47:58 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 04:49:28 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 90.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ribor.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:ribor.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings ribor_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/ribor.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ribor/DESCRIPTION’ ... OK * this is package ‘ribor’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ribor’ can be installed ... OK * checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: extdata 4.7Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.11-bioc/meat/ribor.Rcheck/00check.log’ for details.
ribor.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL ribor ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘ribor’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ribor)
ribor.Rcheck/tests/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ribor) > > test_check("ribor") ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 88 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 23.405 0.371 24.156
ribor.Rcheck/ribor-Ex.timings
name | user | system | elapsed | |
get_coverage | 0.455 | 0.032 | 0.638 | |
get_experiments | 0.102 | 0.004 | 0.105 | |
get_info | 0.187 | 0.000 | 0.187 | |
get_length_distribution | 0.360 | 0.004 | 0.363 | |
get_metadata | 0.085 | 0.004 | 0.090 | |
get_metagene | 0.312 | 0.004 | 0.316 | |
get_reference_names | 0.684 | 0.004 | 0.722 | |
get_region_coordinates | 2.073 | 0.020 | 2.102 | |
get_region_counts | 0.206 | 0.000 | 0.206 | |
get_region_lengths | 2.010 | 0.012 | 2.021 | |
get_rnaseq | 0.237 | 0.004 | 0.241 | |
get_tidy_metagene | 0.740 | 0.016 | 0.756 | |
plot_length_distribution | 1.105 | 0.016 | 1.131 | |
plot_metagene | 1.276 | 0.008 | 1.284 | |
plot_region_counts | 1.091 | 0.008 | 1.099 | |
rename_default | 0 | 0 | 0 | |
rename_transcripts | 2.196 | 0.012 | 2.207 | |
ribo-class | 2.084 | 0.004 | 2.089 | |
set_aliases | 1.291 | 0.008 | 1.299 | |