Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:59:18 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE qckitfastq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1386/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
qckitfastq 1.4.0 August Guang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | [ OK ] |
Package: qckitfastq |
Version: 1.4.0 |
Command: rm -rf qckitfastq.buildbin-libdir && mkdir qckitfastq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qckitfastq_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R qckitfastq.buildbin-libdir |
StartedAt: 2020-10-17 07:44:36 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 07:45:14 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 38.0 seconds |
RetCode: 0 |
Status: OK |
PackageFile: qckitfastq_1.4.0.tgz |
PackageFileSize: 1.069 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf qckitfastq.buildbin-libdir && mkdir qckitfastq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qckitfastq_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R qckitfastq.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=qckitfastq.buildbin-libdir qckitfastq_1.4.0.tar.gz' >>>>>>> * installing *source* package ‘qckitfastq’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include' -I/usr/local/include -fPIC -Wall -g -O2 -c calc_adapter_content.cpp -o calc_adapter_content.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include' -I/usr/local/include -fPIC -Wall -g -O2 -c gzstream.cpp -o gzstream.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RSeqAn/include' -I/usr/local/include -fPIC -Wall -g -O2 -c read_fastq.cpp -o read_fastq.o read_fastq.cpp:30:32: warning: unused variable 'it' [-Wunused-variable] std::vector<int>::iterator it; ^ read_fastq.cpp:158:36: warning: unused variable 'qual_by_col_it' [-Wunused-variable] std::vector<uint8_t>::iterator qual_by_col_it; ^ 2 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qckitfastq.so RcppExports.o calc_adapter_content.o gzstream.o read_fastq.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.11-bioc/meat/qckitfastq.buildbin-libdir/00LOCK-qckitfastq/00new/qckitfastq/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qckitfastq) >>>>>>> >>>>>>> FIXING LINKS FOR qckitfastq.buildbin-libdir/qckitfastq/libs/qckitfastq.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "qckitfastq.buildbin-libdir/qckitfastq/libs/qckitfastq.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "qckitfastq.buildbin-libdir/qckitfastq/libs/qckitfastq.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "qckitfastq.buildbin-libdir/qckitfastq/libs/qckitfastq.so"