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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pint
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* checking for file ‘pint/DESCRIPTION’ ... OK
* preparing ‘pint’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘depsearch.Rnw’ using Sweave
Loading required package: mvtnorm
Loading required package: Matrix
Loading required package: dmt
Loading required package: MASS

dmt Copyright (C) 2008-2013 Leo Lahti and Olli-Pekka Huovilainen.
This program comes with ABSOLUTELY NO
WARRANTY.
This is free software, and you are welcome to redistribute it
under the FreeBSD license.



pint Copyright (C) 2008-2013 Olli-Pekka Huovilainen and Leo Lahti.

This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it
under the FreeBSD license.

Imputing missing values..
Imputing missing values..
Matching probes between the data sets..
Calculating dependency models for 17q with method pSimCCA, window size:10
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Error: processing vignette 'depsearch.Rnw' failed with diagnostics:
 chunk 3 
Error in as.double(y) : 
  cannot coerce type 'S4' to vector of type 'double'

--- failed re-building ‘depsearch.Rnw’

SUMMARY: processing the following file failed:
  ‘depsearch.Rnw’

Error: Vignette re-building failed.
Execution halted