Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:18 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE oligoClasses PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1216/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
oligoClasses 1.50.4 Benilton Carvalho
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: oligoClasses |
Version: 1.50.4 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/oligoClasses_1.50.4.tar.gz && rm -rf oligoClasses.buildbin-libdir && mkdir oligoClasses.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oligoClasses.buildbin-libdir oligoClasses_1.50.4.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL oligoClasses_1.50.4.zip && rm oligoClasses_1.50.4.tar.gz oligoClasses_1.50.4.zip |
StartedAt: 2020-10-16 17:56:29 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 17:58:23 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 113.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/oligoClasses_1.50.4.tar.gz && rm -rf oligoClasses.buildbin-libdir && mkdir oligoClasses.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oligoClasses.buildbin-libdir oligoClasses_1.50.4.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL oligoClasses_1.50.4.zip && rm oligoClasses_1.50.4.tar.gz oligoClasses_1.50.4.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 364k 0 0 0 0 0 0 --:--:-- 0:00:01 --:--:-- 0 100 364k 100 364k 0 0 314k 0 0:00:01 0:00:01 --:--:-- 316k install for i386 * installing *source* package 'oligoClasses' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'oligoClasses' finding HTML links ... done AlleleSet-class html finding level-2 HTML links ... done AlleleSet-methods html AssayData-methods html AssayDataList html BeadStudioSet-class html BeadStudioSetList-class html CNSet-class html ClassesNotExported html CopyNumberSet-class html CopyNumberSet-methods html DBPDInfo-class html FeatureSetExtensions-class html GRanges-methods html GenomeAnnotatedDataFrame-class html GenomeAnnotatedDataFrameFrom-methods html SnpSet-methods html SnpSet2-class html SnpSuperSet-class html SummarizedExperiment-methods html affyPlatforms html annotationPackages html assayDataList-methods html batch html batchStatistics html celfileDate html celfileName html checkExists html checkOrder html chromosome-methods html chromosome2integer html clusterOpts html clusterOptsDeprecated html createFF html data-efsExample html data-scqsExample html data-sfsExample html data-sqsExample html db html defunct html exprs-methods html featureDataList-methods html ff_matrix html ff_or_matrix-class html ffdf html fileConnections html flags html gSet-class html gSetList-class html generics html genomeBuild html geometry-methods html getBar html getSequenceLengths html i2p_p2i html integerMatrix html is.ffmatrix html isPackageLoaded html isSnp-methods html kind html largeObjects html ldOpts html length-methods html library2 html list.celfiles html locusLevelData html makeFeatureGRanges html manufacturer-methods html ocLapply html oligoSetExample html oligoSnpSet-methods html parStatus html pdPkgFromBioC html platform-methods html pmFragmentLength-methods html position-methods html requireAnnotation html requireClusterPkgSetDeprecated html sampleNames-methods html splitVec html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'oligoClasses' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'oligoClasses' as oligoClasses_1.50.4.zip * DONE (oligoClasses) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'oligoClasses' successfully unpacked and MD5 sums checked