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INSTALL report for npGSEA on tokay2

This page was generated on 2020-10-17 11:57:17 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE npGSEA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1205/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
npGSEA 1.24.0
Jessica Larson
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/npGSEA
Branch: RELEASE_3_11
Last Commit: 526c938
Last Changed Date: 2020-04-27 14:40:01 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: npGSEA
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/npGSEA_1.24.0.tar.gz && rm -rf npGSEA.buildbin-libdir && mkdir npGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=npGSEA.buildbin-libdir npGSEA_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL npGSEA_1.24.0.zip && rm npGSEA_1.24.0.tar.gz npGSEA_1.24.0.zip
StartedAt: 2020-10-16 18:15:14 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:15:54 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 39.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/npGSEA_1.24.0.tar.gz && rm -rf npGSEA.buildbin-libdir && mkdir npGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=npGSEA.buildbin-libdir npGSEA_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL npGSEA_1.24.0.zip && rm npGSEA_1.24.0.tar.gz npGSEA_1.24.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 20802  100 20802    0     0   140k      0 --:--:-- --:--:-- --:--:--  147k

install for i386

* installing *source* package 'npGSEA' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'BiocGenerics' for request: 'unlist' when loading 'npGSEA'
** help
*** installing help indices
  converting help for package 'npGSEA'
    finding HTML links ... done
    DF-methods                              html  
    alphaValue-methods                      html  
    betaHats-methods                        html  
    betaStat-methods                        html  
    betaValue-methods                       html  
    chiSqStat-methods                       html  
    geneSetName-methods                     html  
    getIncidence                            html  
    npGSEA                                  html  
    npGSEAPlot-methods                      html  
    npGSEAResultBeta-class                  html  
    npGSEAResultBetaCollection-class        html  
    npGSEAResultChiSq-class                 html  
    npGSEAResultChiSqCollection-class       html  
    npGSEAResultNorm-class                  html  
    npGSEAResultNormCollection-class        html  
    pLeft-methods                           html  
    pRight-methods                          html  
    pTwoSided-methods                       html  
    pValues-methods                         html  
    show-methods                            html  
    sigmaSq-methods                         html  
    stat-methods                            html  
    xSet-methods                            html  
    zStat-methods                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'BiocGenerics' for request: 'unlist' when loading 'npGSEA'
** testing if installed package can be loaded from final location
No methods found in package 'BiocGenerics' for request: 'unlist' when loading 'npGSEA'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'npGSEA' ...
** testing if installed package can be loaded
No methods found in package 'BiocGenerics' for request: 'unlist' when loading 'npGSEA'
* MD5 sums
packaged installation of 'npGSEA' as npGSEA_1.24.0.zip
* DONE (npGSEA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'npGSEA' successfully unpacked and MD5 sums checked