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INSTALL report for methyvim on tokay2

This page was generated on 2020-10-17 11:57:05 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE methyvim PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1067/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methyvim 1.10.0
Nima Hejazi
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/methyvim
Branch: RELEASE_3_11
Last Commit: 9bcf5ef
Last Changed Date: 2020-04-27 15:11:00 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: methyvim
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methyvim_1.10.0.tar.gz && rm -rf methyvim.buildbin-libdir && mkdir methyvim.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyvim.buildbin-libdir methyvim_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methyvim_1.10.0.zip && rm methyvim_1.10.0.tar.gz methyvim_1.10.0.zip
StartedAt: 2020-10-16 19:10:51 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:12:18 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 87.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methyvim_1.10.0.tar.gz && rm -rf methyvim.buildbin-libdir && mkdir methyvim.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyvim.buildbin-libdir methyvim_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methyvim_1.10.0.zip && rm methyvim_1.10.0.tar.gz methyvim_1.10.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  301k  100  301k    0     0  4788k      0 --:--:-- --:--:-- --:--:-- 5296k

install for i386

* installing *source* package 'methyvim' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'methyvim'
    finding HTML links ... done
    cluster_sites                           html  
    fdr_msa                                 html  
    force_positivity                        html  
    limma_screen                            html  
    methyheat                               html  
    methytmle-class                         html  
    methyvim                                html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim.Rd:31: file link 'GenomicRatioSet' in package 'minfi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim.Rd:53: file link 'getBeta' in package 'minfi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim.Rd:54: file link 'getM' in package 'minfi' does not exist and so has been treated as a topic
    methyvim_tmle                           html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim_tmle.Rd:34: file link 'getBeta' in package 'minfi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim_tmle.Rd:35: file link 'getM' in package 'minfi' does not exist and so has been treated as a topic
    methyvolc                               html  
    plot.methytmle                          html  
    set_parallel                            html  
    wrap_in_try                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'methyvim' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methyvim' as methyvim_1.10.0.zip
* DONE (methyvim)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'methyvim' successfully unpacked and MD5 sums checked