Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:05 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE methyvim PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1067/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
methyvim 1.10.0 Nima Hejazi
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
Package: methyvim |
Version: 1.10.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methyvim_1.10.0.tar.gz && rm -rf methyvim.buildbin-libdir && mkdir methyvim.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyvim.buildbin-libdir methyvim_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methyvim_1.10.0.zip && rm methyvim_1.10.0.tar.gz methyvim_1.10.0.zip |
StartedAt: 2020-10-16 19:10:51 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 19:12:18 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 87.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methyvim_1.10.0.tar.gz && rm -rf methyvim.buildbin-libdir && mkdir methyvim.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyvim.buildbin-libdir methyvim_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methyvim_1.10.0.zip && rm methyvim_1.10.0.tar.gz methyvim_1.10.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 301k 100 301k 0 0 4788k 0 --:--:-- --:--:-- --:--:-- 5296k install for i386 * installing *source* package 'methyvim' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'methyvim' finding HTML links ... done cluster_sites html fdr_msa html force_positivity html limma_screen html methyheat html methytmle-class html methyvim html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim.Rd:31: file link 'GenomicRatioSet' in package 'minfi' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim.Rd:53: file link 'getBeta' in package 'minfi' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim.Rd:54: file link 'getM' in package 'minfi' does not exist and so has been treated as a topic methyvim_tmle html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim_tmle.Rd:34: file link 'getBeta' in package 'minfi' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim_tmle.Rd:35: file link 'getM' in package 'minfi' does not exist and so has been treated as a topic methyvolc html plot.methytmle html set_parallel html wrap_in_try html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'methyvim' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'methyvim' as methyvim_1.10.0.zip * DONE (methyvim) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'methyvim' successfully unpacked and MD5 sums checked