Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:05 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE methylumi PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1066/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
methylumi 2.34.0 Sean Davis
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: methylumi |
Version: 2.34.0 |
Command: rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.34.0.tar.gz |
StartedAt: 2020-10-17 11:00:53 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 11:02:46 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 112.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: methylumi_2.34.0.zip |
PackageFileSize: 8.428 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.34.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'methylumi' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'methylumi' finding HTML links ... done CpGs html MethyLumi-class html finding level-2 HTML links ... done MethyLumiM-class html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpc7zEO6/R.INSTALL5007ad64dcd/methylumi/man/MethyLumiM-class.Rd:41: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpc7zEO6/R.INSTALL5007ad64dcd/methylumi/man/MethyLumiM-class.Rd:41: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpc7zEO6/R.INSTALL5007ad64dcd/methylumi/man/MethyLumiM-class.Rd:53: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpc7zEO6/R.INSTALL5007ad64dcd/methylumi/man/MethyLumiM-class.Rd:54: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpc7zEO6/R.INSTALL5007ad64dcd/methylumi/man/MethyLumiM-class.Rd:55: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpc7zEO6/R.INSTALL5007ad64dcd/methylumi/man/MethyLumiM-class.Rd:56: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpc7zEO6/R.INSTALL5007ad64dcd/methylumi/man/MethyLumiM-class.Rd:57: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpc7zEO6/R.INSTALL5007ad64dcd/methylumi/man/MethyLumiM-class.Rd:58: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpc7zEO6/R.INSTALL5007ad64dcd/methylumi/man/MethyLumiM-class.Rd:70: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic MethyLumiQC-class html MethyLumiSet-class html estimateM html extractBarcodeAndPosition html featureFilter html generics html getAssayDataNameSubstitutions html methylData-class html methylumIDAT html methylumi-package html methylumiGenerics html methylumiR html mldat html normalizeMethyLumiSet html plotSampleIntensities html qcplot html stripBeadExtras html varFilter html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'methylumi' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'methylumi' as methylumi_2.34.0.zip * DONE (methylumi)