Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:03 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE metahdep PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1039/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
metahdep 1.46.0 John R. Stevens
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: metahdep |
Version: 1.46.0 |
Command: rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metahdep.buildbin-libdir metahdep_1.46.0.tar.gz |
StartedAt: 2020-10-17 10:59:05 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 10:59:45 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 40.0 seconds |
RetCode: 0 |
Status: OK |
PackageFile: metahdep_1.46.0.zip |
PackageFileSize: 572.9 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metahdep.buildbin-libdir metahdep_1.46.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'metahdep' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metahdep.c -o metahdep.o In file included from metahdep.c:3: metahdep.c: In function 'get_row_indices2': C:/Users/BIOCBU~1/BBS-3~1.11-/R/include/Rinternals.h:620:18: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion] #define CHAR(x) R_CHAR(x) ^~~~~~~~~ metahdep.c:471:79: note: in expansion of macro 'CHAR' index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i); ^~~~ metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *' SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num) ~~~~~^~~~~~~~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/metahdep.buildbin-libdir/00LOCK-metahdep/00new/metahdep/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'metahdep' finding HTML links ... done ES.obj-class html HGU.DifExp.list html HGU.newnames html HGU.prep.list html getPLM.es html gloss html metahdep.FEMA html metahdep.HBLM html metahdep.REMA html metahdep html metahdep.format html metahdep.other html metaprep-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'metahdep' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metahdep.c -o metahdep.o In file included from metahdep.c:3: metahdep.c: In function 'get_row_indices2': C:/Users/BIOCBU~1/BBS-3~1.11-/R/include/Rinternals.h:620:18: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion] #define CHAR(x) R_CHAR(x) ^~~~~~~~~ metahdep.c:471:79: note: in expansion of macro 'CHAR' index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i); ^~~~ metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *' SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num) ~~~~~^~~~~~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/metahdep.buildbin-libdir/metahdep/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'metahdep' as metahdep_1.46.0.zip * DONE (metahdep)