Davide Risso
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/mbkmeans |
| Branch: RELEASE_3_11 |
| Last Commit: 54c4146 |
| Last Changed Date: 2020-09-30 15:39:13 -0400 (Wed, 30 Sep 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:01 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE mbkmeans PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1003/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| mbkmeans 1.4.1 Davide Risso
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: mbkmeans |
| Version: 1.4.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/mbkmeans_1.4.1.tar.gz && rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mbkmeans.buildbin-libdir mbkmeans_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL mbkmeans_1.4.1.zip && rm mbkmeans_1.4.1.tar.gz mbkmeans_1.4.1.zip |
| StartedAt: 2020-10-16 18:22:36 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:24:32 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 115.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/mbkmeans_1.4.1.tar.gz && rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mbkmeans.buildbin-libdir mbkmeans_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL mbkmeans_1.4.1.zip && rm mbkmeans_1.4.1.tar.gz mbkmeans_1.4.1.zip
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0 20812 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 20812 100 20812 0 0 260k 0 --:--:-- --:--:-- --:--:-- 282k
install for i386
* installing *source* package 'mbkmeans' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::__cxx11::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include/ClusterRHeader.h:850:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^~~~~~
C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::__cxx11::string, std::__cxx11::string, int, int, bool, double, int)':
C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include/ClusterRHeader.h:1446:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^~~~~~
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'mbkmeans'
finding HTML links ... done
blocksize html
compute_wcss html
mbkmeans html
mini_batch html
predict_mini_batch html
predict_mini_batch_r html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'mbkmeans' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::__cxx11::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include/ClusterRHeader.h:850:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^~~~~~
C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::__cxx11::string, std::__cxx11::string, int, int, bool, double, int)':
C:/Users/biocbuild/bbs-3.11-bioc/R/library/ClusterR/include/ClusterRHeader.h:1446:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^~~~~~
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/mbkmeans.buildbin-libdir/mbkmeans/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mbkmeans' as mbkmeans_1.4.1.zip
* DONE (mbkmeans)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'mbkmeans' successfully unpacked and MD5 sums checked