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INSTALL report for manta on malbec2

This page was generated on 2020-10-17 11:55:03 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE manta PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 981/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
manta 1.34.0
Chris Berthiaume , Adrian Marchetti
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/manta
Branch: RELEASE_3_11
Last Commit: ca7ddbf
Last Changed Date: 2020-04-27 14:28:19 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: manta
Version: 1.34.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL manta
StartedAt: 2020-10-16 16:20:05 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:20:15 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 10.1 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL manta
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘manta’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'manta' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'manta' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path
* DONE (manta)