Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:58:29 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE flowMatch PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 616/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
flowMatch 1.24.0 Ariful Azad
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
Package: flowMatch |
Version: 1.24.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowMatch.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowMatch_1.24.0.tar.gz |
StartedAt: 2020-10-17 01:12:46 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 01:15:09 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 143.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: flowMatch.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowMatch.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowMatch_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/flowMatch.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘flowMatch/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘flowMatch’ version ‘1.24.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘flowMatch’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ClusteredSample: no visible global function definition for ‘cov’ ellipse: no visible global function definition for ‘qchisq’ ellipse: no visible global function definition for ‘lines’ limitcalc: no visible global function definition for ‘qchisq’ plot.cluster.contours: no visible global function definition for ‘par’ plot.cluster.contours: no visible global function definition for ‘plot.new’ plot.cluster.contours: no visible global function definition for ‘mtext’ template.tree,Template: no visible global function definition for ‘as.dendrogram’ Undefined global functions or variables: as.dendrogram cov lines mtext par plot.new qchisq Consider adding importFrom("graphics", "lines", "mtext", "par", "plot.new") importFrom("stats", "as.dendrogram", "cov", "qchisq") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Template-class 12.124 0.214 12.361 create.template 12.147 0.191 12.348 flowMatch-package 10.338 0.128 10.478 MetaCluster-class 10.134 0.151 10.313 template.tree 9.905 0.080 9.993 ClusterMatch-class 6.116 0.116 6.240 match.clusters 5.889 0.052 5.948 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.11-bioc/meat/flowMatch.Rcheck/00check.log’ for details.
flowMatch.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL flowMatch ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘flowMatch’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c BipartiteGraph.cpp -o BipartiteGraph.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c flowMatch.cpp -o flowMatch.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowMatch.so BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-flowMatch/00new/flowMatch/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowMatch)
flowMatch.Rcheck/flowMatch-Ex.timings
name | user | system | elapsed | |
Cluster-class | 0.864 | 0.042 | 0.910 | |
ClusterMatch-class | 6.116 | 0.116 | 6.240 | |
ClusteredSample-class | 1.514 | 0.256 | 1.772 | |
MetaCluster-class | 10.134 | 0.151 | 10.313 | |
Template-class | 12.124 | 0.214 | 12.361 | |
create.template | 12.147 | 0.191 | 12.348 | |
dist.cluster | 0.562 | 0.010 | 0.571 | |
dist.matrix | 1.154 | 0.018 | 1.173 | |
dist.sample | 1.235 | 0.014 | 1.250 | |
dist.template | 4.650 | 0.054 | 4.710 | |
flowMatch-package | 10.338 | 0.128 | 10.478 | |
mahalanobis.dist | 0.646 | 0.010 | 0.657 | |
match.clusters | 5.889 | 0.052 | 5.948 | |
symmetric.KL | 0.650 | 0.013 | 0.665 | |
template.tree | 9.905 | 0.080 | 9.993 | |