Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:34 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE flowCHIC PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 606/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
flowCHIC 1.22.0 Author: Joachim Schumann
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: flowCHIC |
Version: 1.22.0 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowCHIC.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings flowCHIC_1.22.0.tar.gz |
StartedAt: 2020-10-17 04:04:44 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 04:08:21 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 217.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: flowCHIC.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowCHIC.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings flowCHIC_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/flowCHIC.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'flowCHIC/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'flowCHIC' version '1.22.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'flowCHIC' can be installed ... OK * checking installed package size ... NOTE installed size is 5.9Mb sub-directories of 1Mb or more: extdata 5.7Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE fcs_to_img,character: warning in hexbin(x, y, xbin = 128): partial argument match of 'xbin' to 'xbins' img_sub,character: warning in hexbin(x, y, xbin = xbin): partial argument match of 'xbin' to 'xbins' fcs_to_img,character: no visible global function definition for 'png' fcs_to_img,character: no visible binding for global variable 'count' fcs_to_img,character: no visible global function definition for 'dev.off' img_sub,character: no visible global function definition for 'png' img_sub,character: no visible binding for global variable 'count' img_sub,character: no visible global function definition for 'dev.off' plot_nmds,data.frame-data.frame: no visible global function definition for 'as.dist' plot_nmds,data.frame-data.frame: no visible global function definition for 'par' plot_nmds,data.frame-data.frame: no visible global function definition for 'hclust' plot_nmds,data.frame-data.frame: no visible global function definition for 'points' plot_nmds,data.frame-data.frame: no visible global function definition for 'text' plot_nmds,data.frame-data.frame: no visible global function definition for 'legend' Undefined global functions or variables: as.dist count dev.off hclust legend par png points text Consider adding importFrom("grDevices", "dev.off", "png") importFrom("graphics", "legend", "par", "points", "text") importFrom("stats", "as.dist", "hclust") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed calculate_overlaps_xor 8.75 2.36 26.25 plot_nmds 5.16 1.14 20.23 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed calculate_overlaps_xor 8.58 2.72 18.5 plot_nmds 4.92 1.04 9.2 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/flowCHIC.Rcheck/00check.log' for details.
flowCHIC.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/flowCHIC_1.22.0.tar.gz && rm -rf flowCHIC.buildbin-libdir && mkdir flowCHIC.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowCHIC.buildbin-libdir flowCHIC_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL flowCHIC_1.22.0.zip && rm flowCHIC_1.22.0.tar.gz flowCHIC_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3126k 100 3126k 0 0 30.7M 0 --:--:-- --:--:-- --:--:-- 32.8M install for i386 * installing *source* package 'flowCHIC' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'flowCHIC' finding HTML links ... done Results_overlaps html Results_overlaps_incol html Results_overlaps_mix html Results_xor html Results_xor_incol html Results_xor_mix html abiotic_incol html calculate_overlaps_xor html fcs_to_img html flowCHIC_package html img_sub html plot_nmds html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'flowCHIC' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'flowCHIC' as flowCHIC_1.22.0.zip * DONE (flowCHIC) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'flowCHIC' successfully unpacked and MD5 sums checked
flowCHIC.Rcheck/examples_i386/flowCHIC-Ex.timings
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flowCHIC.Rcheck/examples_x64/flowCHIC-Ex.timings
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