Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:54:40 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE discordant PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 480/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
discordant 1.12.0 Charlotte Siska
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ WARNINGS ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: discordant |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:discordant.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings discordant_1.12.0.tar.gz |
StartedAt: 2020-10-17 00:47:00 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 00:47:42 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 42.2 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: discordant.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:discordant.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings discordant_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/discordant.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘discordant/DESCRIPTION’ ... OK * this is package ‘discordant’ version ‘1.12.0’ * package encoding: latin1 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘discordant’ can be installed ... WARNING Found the following significant warnings: discordant.c:21:13: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] discordant.c:147:13: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] See ‘/home/biocbuild/bbs-3.11-bioc/meat/discordant.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.11-bioc/meat/discordant.Rcheck/00check.log’ for details.
discordant.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL discordant ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘discordant’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c discordant.c -o discordant.o discordant.c: In function ‘em_normal_partial_concordant’: discordant.c:21:13: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] while(flag>0 & iter<(*iteration)){ ~~~~^~ discordant.c:147:13: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] while(flag>0 & iter<(*iteration)){ ~~~~^~ gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o discordant.so discordant.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-discordant/00new/discordant/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (discordant)
discordant.Rcheck/discordant-Ex.timings
name | user | system | elapsed | |
createVectors | 0.036 | 0.000 | 0.036 | |
discordantRun | 0.999 | 0.000 | 0.999 | |
fishersTrans | 0.021 | 0.004 | 0.025 | |
split.MADOutlier | 0.056 | 0.004 | 0.061 | |