Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:58:22 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE dexus PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 466/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
dexus 1.28.0 Guenter Klambauer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | [ OK ] |
Package: dexus |
Version: 1.28.0 |
Command: rm -rf dexus.buildbin-libdir && mkdir dexus.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh dexus_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R dexus.buildbin-libdir |
StartedAt: 2020-10-17 06:56:43 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 06:57:02 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 18.7 seconds |
RetCode: 0 |
Status: OK |
PackageFile: dexus_1.28.0.tgz |
PackageFileSize: 3.377 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf dexus.buildbin-libdir && mkdir dexus.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh dexus_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R dexus.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=dexus.buildbin-libdir dexus_1.28.0.tar.gz' >>>>>>> * installing *source* package ‘dexus’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c dexus.cpp -o dexus.o dexus.cpp:136:15: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((innerCyc==maxInnerCyc)) ~~~~~~~~^~~~~~~~~~~~~ dexus.cpp:136:15: note: remove extraneous parentheses around the comparison to silence this warning if ((innerCyc==maxInnerCyc)) ~ ^ ~ dexus.cpp:136:15: note: use '=' to turn this equality comparison into an assignment if ((innerCyc==maxInnerCyc)) ^~ = dexus.cpp:193:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable] const double DEFAULT_R = 20; // R value used when re-setting clusters ^ dexus.cpp:575:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable] const double DEFAULT_R = 20; // R value used when re-setting clusters ^ 3 warnings generated. clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dexus.so dexus.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.11-bioc/meat/dexus.buildbin-libdir/00LOCK-dexus/00new/dexus/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dexus) >>>>>>> >>>>>>> FIXING LINKS FOR dexus.buildbin-libdir/dexus/libs/dexus.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "dexus.buildbin-libdir/dexus/libs/dexus.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "dexus.buildbin-libdir/dexus/libs/dexus.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "dexus.buildbin-libdir/dexus/libs/dexus.so"