Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:12 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE canceR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 224/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
canceR 1.22.01 Karim Mezhoud
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: canceR |
Version: 1.22.01 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/canceR_1.22.01.tar.gz && rm -rf canceR.buildbin-libdir && mkdir canceR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=canceR.buildbin-libdir canceR_1.22.01.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL canceR_1.22.01.zip && rm canceR_1.22.01.tar.gz canceR_1.22.01.zip |
StartedAt: 2020-10-16 19:29:16 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 19:31:26 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 130.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/canceR_1.22.01.tar.gz && rm -rf canceR.buildbin-libdir && mkdir canceR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=canceR.buildbin-libdir canceR_1.22.01.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL canceR_1.22.01.zip && rm canceR_1.22.01.tar.gz canceR_1.22.01.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 28.3M 100 28.3M 0 0 50.4M 0 --:--:-- --:--:-- --:--:-- 50.9M install for i386 * installing *source* package 'canceR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'canceR' finding HTML links ... done GSEA.Analyze.Sets html GSEA.ConsPlot html GSEA.EnrichmentScore html GSEA.EnrichmentScore2 html GSEA.Gct2Frame html GSEA.Gct2Frame2 html GSEA.GeneRanking html GSEA.HeatMapPlot html GSEA.HeatMapPlot2 html GSEA.NormalizeCols html GSEA.NormalizeRows html GSEA html GSEA.ReadClsFile html GSEA.Res2Frame html GSEA.Threshold html GSEA.VarFilter html GSEA.write.gct html Match_GeneList_MSigDB html OLD.GSEA.EnrichmentScore html Run.GSEA html about html canceR html canceRHelp html canceR_Vignette html cbind.na html dialogGeneClassifier html dialogMetOption html dialogMut html dialogOptionCircos html dialogOptionGSEAlm html dialogOptionPhenoTest html dialogPlotOption_SkinCor html dialogSamplingGSEA html dialogSelectFiles_GSEA html dialogSpecificMut html dialogSummary_GSEA html dialoggetGeneListMSigDB html displayInTable html getCases html getCasesGenProfs html getCircos html getClinicData_MultipleCases html getClinicalDataMatrix html getCor_ExpCNAMet html getGCTCLSExample html getGCT_CLSfiles html getGSEAlm_Diseases html getGSEAlm_Variables html getGenProfs html getGeneExpMatrix html getGeneList html getGeneListExample html getGeneListFromMSigDB html getGenesClassifier html getGenesTree_MultipleCases html getGenesTree_SingleCase html getInTable html getListProfData html getMSigDB html getMSigDBExample html getMSigDBfile html getMegaProfData html getMetDataMultipleGenes html getMutData html getPhenoTest html getProfilesDataMultipleGenes html getProfilesDataSingleGene html getSpecificMut html getSummaryGSEA html getSurvival html getTextWin html geteSet html modalDialog html myGlobalEnv html plotModel html plot_1Gene_2GenProfs html plot_2Genes_1GenProf html rbind.na html setWorkspace html testCheckedCaseGenProf html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'canceR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'canceR' as canceR_1.22.01.zip * DONE (canceR) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'canceR' successfully unpacked and MD5 sums checked