Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:07 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE bayNorm PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 123/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
bayNorm 1.6.0 Wenhao Tang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: bayNorm |
Version: 1.6.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/bayNorm_1.6.0.tar.gz && rm -rf bayNorm.buildbin-libdir && mkdir bayNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bayNorm.buildbin-libdir bayNorm_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL bayNorm_1.6.0.zip && rm bayNorm_1.6.0.tar.gz bayNorm_1.6.0.zip |
StartedAt: 2020-10-16 18:22:50 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 18:24:25 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 95.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/bayNorm_1.6.0.tar.gz && rm -rf bayNorm.buildbin-libdir && mkdir bayNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bayNorm.buildbin-libdir bayNorm_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL bayNorm_1.6.0.zip && rm bayNorm_1.6.0.tar.gz bayNorm_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1333k 100 1333k 0 0 18.3M 0 --:--:-- --:--:-- --:--:-- 20.3M install for i386 * installing *source* package 'bayNorm' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayNorm_main.cpp -o bayNorm_main.o bayNorm_main.cpp: In function 'Rcpp::List EstPrior_sprcpp(arma::sp_mat)': bayNorm_main.cpp:1374:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ bayNorm_main.cpp: In function 'Rcpp::List EstPrior_rcpp(Rcpp::NumericMatrix)': bayNorm_main.cpp:1427:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/bayNorm.buildbin-libdir/00LOCK-bayNorm/00new/bayNorm/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bayNorm' finding HTML links ... done AdjustSIZE_fun html BB_Fun html BetaFun html Check_input html DownSampling html EXAMPLE_DATA_list html EstPrior html EstPrior_rcpp html EstPrior_sprcpp html NOISY_FUN html Prior_fun html SyntheticControl html asMatrix html as_matrix html bayNorm html bayNorm_sup html noisy_gene_detection html t_sp html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'bayNorm' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayNorm_main.cpp -o bayNorm_main.o bayNorm_main.cpp: In function 'Rcpp::List EstPrior_sprcpp(arma::sp_mat)': bayNorm_main.cpp:1374:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ bayNorm_main.cpp: In function 'Rcpp::List EstPrior_rcpp(Rcpp::NumericMatrix)': bayNorm_main.cpp:1427:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/bayNorm.buildbin-libdir/bayNorm/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'bayNorm' as bayNorm_1.6.0.zip * DONE (bayNorm) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'bayNorm' successfully unpacked and MD5 sums checked