Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:04 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE amplican PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 51/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
amplican 1.10.1 Eivind Valen
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: amplican |
Version: 1.10.1 |
Command: rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=amplican.buildbin-libdir amplican_1.10.1.tar.gz |
StartedAt: 2020-10-17 09:48:18 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 09:49:48 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 89.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: amplican_1.10.1.zip |
PackageFileSize: 5.949 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=amplican.buildbin-libdir amplican_1.10.1.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'amplican' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bezier.cpp -o bezier.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o amplican.dll tmp.def RcppExports.o bezier.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/amplican.buildbin-libdir/00LOCK-amplican/00new/amplican/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'amplican' finding HTML links ... done AlignmentsExperimentSet-class html finding level-2 HTML links ... done alphabetQuality html amplican html amplicanAlign html amplicanConsensus html amplicanFilter html amplicanMap html amplicanNormalize html amplicanOverlap html amplicanPipeline html amplicanPipelineConservative html amplicanReport html amplicanSummarize html amplican_print_reads html assignedCount html barcodeData-set html barcodeData html checkConfigFile html checkFileWriteAccess html checkPrimers html checkTarget html cigarsToEvents html comb_along html cumsumw html decode html defGR html experimentData-set html experimentData html extractEvents html findEOP html findLQR html findPD html flipRanges html fwdReads-set html fwdReads html fwdReadsType-set html fwdReadsType html geom_bezier html getEventInfo html getEvents html get_amplicon html get_left_primer html get_right_primer html goodAvgQuality html goodBaseQuality html lookupAlignment html makeAlignment html metaplot_deletions html metaplot_insertions html metaplot_mismatches html pairToEvents html plot_amplicon html plot_cuts html plot_deletions html plot_height html plot_heterogeneity html plot_insertions html plot_mismatches html plot_variants html readCounts-set html readCounts html revComp html rveReads-set html rveReads html rveReadsType-set html rveReadsType html unassignedCount html unassignedData-set html unassignedData html upperGroups html writeAlignments html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'amplican' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bezier.cpp -o bezier.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o amplican.dll tmp.def RcppExports.o bezier.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/amplican.buildbin-libdir/amplican/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'amplican' as amplican_1.10.1.zip * DONE (amplican)