Tobias Verbeke
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/a4Base |
| Branch: RELEASE_3_11 |
| Last Commit: f61ee95 |
| Last Changed Date: 2020-04-27 14:25:17 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:02 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE a4Base PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| a4Base 1.36.0 Tobias Verbeke
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | [ OK ] | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: a4Base |
| Version: 1.36.0 |
| Command: rm -rf a4Base.buildbin-libdir && mkdir a4Base.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=a4Base.buildbin-libdir a4Base_1.36.0.tar.gz |
| StartedAt: 2020-10-17 09:44:40 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 09:45:39 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 59.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: a4Base_1.36.0.zip |
| PackageFileSize: 591.1 KiB |
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### Running command:
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### rm -rf a4Base.buildbin-libdir && mkdir a4Base.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=a4Base.buildbin-libdir a4Base_1.36.0.tar.gz
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install for i386
* installing *source* package 'a4Base' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'KEGG.db' is deprecated and will be removed from Bioconductor
version 3.12
** help
*** installing help indices
converting help for package 'a4Base'
finding HTML links ... done
ExpressionSetWithComputation html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMBMw0V/R.INSTALL36b81db3f8c/a4Base/man/ExpressionSetWithComputation.Rd:23: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMBMw0V/R.INSTALL36b81db3f8c/a4Base/man/ExpressionSetWithComputation.Rd:24: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMBMw0V/R.INSTALL36b81db3f8c/a4Base/man/ExpressionSetWithComputation.Rd:25: file link 'VersionedBiobase' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMBMw0V/R.INSTALL36b81db3f8c/a4Base/man/ExpressionSetWithComputation.Rd:26: file link 'Versioned' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMBMw0V/R.INSTALL36b81db3f8c/a4Base/man/ExpressionSetWithComputation.Rd:33: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
a4palette html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMBMw0V/R.INSTALL36b81db3f8c/a4Base/man/a4palette.Rd:27: file link 'rainbow' in package 'grDevices' does not exist and so has been treated as a topic
addQuantilesColors html
boxPlot html
combineTwoExpressionSet html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMBMw0V/R.INSTALL36b81db3f8c/a4Base/man/combineTwoExpressionSet.Rd:22: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
computeLogRatio html
createExpressionSet html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMBMw0V/R.INSTALL36b81db3f8c/a4Base/man/createExpressionSet.Rd:30: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
filterVarInt html
heatmap.expressionSet html
histPvalue html
histpvalueplotter html
lassoReg html
limmaTwoLevels html
logReg html
nlcvTT html
plot1gene html
plotComb2Samples html
plotCombMultSamples html
plotCombination2genes html
plotLogRatio html
probabilitiesPlot html
probe2gene html
profilesPlot html
propDEgenes-methods html
propDEgenes html
propdegenescalculation html
replicates html
spectralMap-methods html
spectralMap html
tTest html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMBMw0V/R.INSTALL36b81db3f8c/a4Base/man/tTest.Rd:40: file link 'rowttests' in package 'genefilter' does not exist and so has been treated as a topic
topTable-methods html
volcanoPlot-methods html
volcanoPlot html
volcanoplotter html
** building package indices
** testing if installed package can be loaded from temporary location
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
version 3.12
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'a4Base' ...
** testing if installed package can be loaded
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
version 3.12
* MD5 sums
packaged installation of 'a4Base' as a4Base_1.36.0.zip
* DONE (a4Base)