Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:58 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE Ularcirc PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1855/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Ularcirc 1.6.0 David Humphreys
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | NA | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: Ularcirc |
Version: 1.6.0 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Ularcirc.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings Ularcirc_1.6.0.tar.gz |
StartedAt: 2020-10-17 09:07:29 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 09:10:12 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 163.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Ularcirc.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Ularcirc.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings Ularcirc_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/Ularcirc.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'Ularcirc/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'Ularcirc' version '1.6.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Ularcirc' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: 'DT' 'GenomeInfoDb' 'GenomeInfoDbData' 'Organism.dplyr' 'Sushi' 'ggplot2' 'ggrepel' 'gsubfn' 'mirbase.db' 'moments' 'shinyFiles' 'shinydashboard' 'shinyjs' 'yaml' All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Compatible_Annotation_DBs 8.31 1.11 9.56 bsj_to_circRNA_sequence 2.30 0.20 5.73 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Compatible_Annotation_DBs 9.33 0.42 9.75 bsj_to_circRNA_sequence 2.36 0.20 5.77 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/Ularcirc.Rcheck/00check.log' for details.
Ularcirc.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/Ularcirc_1.6.0.tar.gz && rm -rf Ularcirc.buildbin-libdir && mkdir Ularcirc.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Ularcirc.buildbin-libdir Ularcirc_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL Ularcirc_1.6.0.zip && rm Ularcirc_1.6.0.tar.gz Ularcirc_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 4766k 100 4766k 0 0 44.8M 0 --:--:-- --:--:-- --:--:-- 47.9M install for i386 * installing *source* package 'Ularcirc' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Ularcirc' finding HTML links ... done Compatible_Annotation_DBs html Ularcirc html bsj_fastq_generate html bsj_to_circRNA_sequence html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'Ularcirc' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'Ularcirc' as Ularcirc_1.6.0.zip * DONE (Ularcirc) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'Ularcirc' successfully unpacked and MD5 sums checked
Ularcirc.Rcheck/examples_i386/Ularcirc-Ex.timings
|
Ularcirc.Rcheck/examples_x64/Ularcirc-Ex.timings
|