Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:55 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE TFBSTools PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1793/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
TFBSTools 1.26.0 Ge Tan
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | NA | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: TFBSTools |
Version: 1.26.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TFBSTools_1.26.0.tar.gz && rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFBSTools.buildbin-libdir TFBSTools_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TFBSTools_1.26.0.zip && rm TFBSTools_1.26.0.tar.gz TFBSTools_1.26.0.zip |
StartedAt: 2020-10-16 18:48:26 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 18:50:14 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 107.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TFBSTools_1.26.0.tar.gz && rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFBSTools.buildbin-libdir TFBSTools_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TFBSTools_1.26.0.zip && rm TFBSTools_1.26.0.tar.gz TFBSTools_1.26.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 151k 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 151k 100 151k 0 0 1728k 0 --:--:-- --:--:-- --:--:-- 1849k install for i386 * installing *source* package 'TFBSTools' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o matrixAlignerDynamic.c: In function 'score': matrixAlignerDynamic.c:235:22: warning: 'best_pntr' may be used uninitialized in this function [-Wmaybe-uninitialized] while (current_pntr->father != NULL){ // while the father of the current pointer exists, walk through the best posible alignment ~~~~~~~~~~~~^~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_TFBSTools.c -o R_init_TFBSTools.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o TFBSTools.dll tmp.def matrixAlignerDynamic.o R_init_TFBSTools.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/TFBSTools.buildbin-libdir/00LOCK-TFBSTools/00new/TFBSTools/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'seqLogo' in package 'TFBSTools' ** help *** installing help indices converting help for package 'TFBSTools' finding HTML links ... done IUPAC2Matrix html MA0004.1 html MotifSet-class html PFMSimilarity-methods html PWMSimilarity-methods html SitePairSet-class html SitePairSetList-class html SiteSet-class html SiteSetList-class html TFBSTools-package html TFFM-class html XMatrix-class html XMatrixList-class html calConservation-methods html deleteMatrixHavingID-methods html dmmEM-methods html getEmissionProb html getMatrixByID-methods html getMatrixSet-methods html getPosProb html makeFlatFileDir html parseMEMEOutput html permuteMatrix-methods html rPWMDmm-methods html readJASPARMatrix html readXMLTFFM html runMEME-methods html sampleRanges html searchAln-methods html searchPairBSgenome-methods html searchSeq-methods html seqLogo html shannon.entropy html toGRangesList-methods html toICM-methods html finding level-2 HTML links ... done toPWM-methods html writeGFF3-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'TFBSTools' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o matrixAlignerDynamic.c: In function 'score': matrixAlignerDynamic.c:235:22: warning: 'best_pntr' may be used uninitialized in this function [-Wmaybe-uninitialized] while (current_pntr->father != NULL){ // while the father of the current pointer exists, walk through the best posible alignment ~~~~~~~~~~~~^~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_TFBSTools.c -o R_init_TFBSTools.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o TFBSTools.dll tmp.def matrixAlignerDynamic.o R_init_TFBSTools.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/TFBSTools.buildbin-libdir/TFBSTools/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'TFBSTools' as TFBSTools_1.26.0.zip * DONE (TFBSTools) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'TFBSTools' successfully unpacked and MD5 sums checked