Tiago Chedraoui Silva
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/TCGAbiolinks |
| Branch: RELEASE_3_11 |
| Last Commit: e3b011da |
| Last Changed Date: 2020-09-08 11:07:02 -0400 (Tue, 08 Sep 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:55 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE TCGAbiolinks PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1784/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TCGAbiolinks 2.16.4 Tiago Chedraoui Silva
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: TCGAbiolinks |
| Version: 2.16.4 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TCGAbiolinks_2.16.4.tar.gz && rm -rf TCGAbiolinks.buildbin-libdir && mkdir TCGAbiolinks.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAbiolinks.buildbin-libdir TCGAbiolinks_2.16.4.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TCGAbiolinks_2.16.4.zip && rm TCGAbiolinks_2.16.4.tar.gz TCGAbiolinks_2.16.4.zip |
| StartedAt: 2020-10-16 18:01:25 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:04:01 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 156.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TCGAbiolinks_2.16.4.tar.gz && rm -rf TCGAbiolinks.buildbin-libdir && mkdir TCGAbiolinks.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAbiolinks.buildbin-libdir TCGAbiolinks_2.16.4.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TCGAbiolinks_2.16.4.zip && rm TCGAbiolinks_2.16.4.tar.gz TCGAbiolinks_2.16.4.zip
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install for i386
* installing *source* package 'TCGAbiolinks' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TCGAbiolinks'
finding HTML links ... done
BRCA_rnaseqv2 html
GDCdownload html
GDCprepare html
GDCprepare_clinic html
GDCquery html
GDCquery_ATAC_seq html
GDCquery_Maf html
GDCquery_clinic html
GeneSplitRegulon html
GenesCutID html
PCBC_stemSig html
PanCancerAtlas_subtypes html
TCGAVisualize_volcano html
TCGA_MolecularSubtype html
TCGAanalyze_Clustering html
TCGAanalyze_DEA html
TCGAanalyze_DEA_Affy html
TCGAanalyze_DMC html
TCGAanalyze_EA html
TCGAanalyze_EAcomplete html
TCGAanalyze_Filtering html
TCGAanalyze_LevelTab html
TCGAanalyze_Normalization html
TCGAanalyze_Pathview html
TCGAanalyze_Preprocessing html
TCGAanalyze_Stemness html
TCGAanalyze_SurvivalKM html
TCGAanalyze_analyseGRN html
TCGAanalyze_networkInference html
TCGAanalyze_survival html
TCGAbatch_Correction html
TCGAbiolinks html
TCGAprepare_Affy html
TCGAquery_MatchedCoupledSampleTypes html
TCGAquery_SampleTypes html
TCGAquery_recount2 html
TCGAquery_subtype html
TCGAtumor_purity html
TCGAvisualize_BarPlot html
TCGAvisualize_EAbarplot html
TCGAvisualize_Heatmap html
TCGAvisualize_PCA html
TCGAvisualize_SurvivalCoxNET html
TCGAvisualize_meanMethylation html
TCGAvisualize_oncoprint html
TCGAvisualize_starburst html
TabSubtypesCol_merged html
Tumor.purity html
UseRaw_afterFilter html
batch.info html
bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf
html
chol_maf html
classification html
clinBRCA html
clinical.biotab html
colDataPrepare html
dataBRCA html
dataDEGsFiltLevel html
dataREAD html
dataREAD_df html
dmc.non.parametric html
dmc.non.parametric.se html
gaiaCNVplot html
gbm.exp.harmonized html
gbm.exp.legacy html
geneInfo html
geneInfoHT html
get.GRCh.bioMart html
getAdjacencyBiogrid html
getDataCategorySummary html
getGDCInfo html
getGDCprojects html
getGistic html
getLinkedOmicsData html
getMC3MAF html
getManifest html
getNbCases html
getNbFiles html
getProjectSummary html
getResults html
getSampleFilesSummary html
getTSS html
get_IDs html
ggbiplot html
gliomaClassifier html
isServeOK html
matchedMetExp html
met.gbm.27k html
msi_results html
pancan2018 html
splitAPICall html
tabSurvKMcompleteDEGs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TCGAbiolinks' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCGAbiolinks' as TCGAbiolinks_2.16.4.zip
* DONE (TCGAbiolinks)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'TCGAbiolinks' successfully unpacked and MD5 sums checked