Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:48 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE SigFuge PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1652/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SigFuge 1.26.0 Patrick Kimes
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | NA | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: SigFuge |
Version: 1.26.0 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SigFuge.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings SigFuge_1.26.0.tar.gz |
StartedAt: 2020-10-17 08:18:10 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 08:21:24 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 193.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SigFuge.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SigFuge.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings SigFuge_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/SigFuge.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'SigFuge/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'SigFuge' version '1.26.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SigFuge' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE SFfigure: no visible binding for global variable 'base' SFfigure: no visible binding for global variable 's' SFfigure: no visible binding for global variable 'e' SFfigure: no visible global function definition for 'rgb' SFfigure: no visible global function definition for 'hcl' SFfigure: no visible binding for global variable 'cluster' SFfigure: no visible binding for global variable 'median' SFfigure: no visible binding for global variable 'x' SFfigure: no visible binding for global variable 'y1' SFfigure: no visible binding for global variable 'label' SFfigure: no visible binding for global variable 'value' SFfigure: no visible binding for global variable 'Clusters' SFfigure: no visible binding for global variable 'y2' SFfigure: no visible global function definition for 'pdf' SFfigure: no visible global function definition for 'dev.off' SFlabels: no visible global function definition for 'kmeans' SFnormalize : <anonymous>: no visible global function definition for 'median' Undefined global functions or variables: Clusters base cluster dev.off e hcl kmeans label median pdf rgb s value x y1 y2 Consider adding importFrom("grDevices", "dev.off", "hcl", "pdf", "rgb") importFrom("stats", "kmeans", "median") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SFfigure 16.76 0.45 17.22 SFpval 10.62 0.38 11.00 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SFfigure 16.88 0.61 17.48 SFpval 9.92 0.75 10.67 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/SigFuge.Rcheck/00check.log' for details.
SigFuge.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SigFuge_1.26.0.tar.gz && rm -rf SigFuge.buildbin-libdir && mkdir SigFuge.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SigFuge.buildbin-libdir SigFuge_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SigFuge_1.26.0.zip && rm SigFuge_1.26.0.tar.gz SigFuge_1.26.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 131k 100 131k 0 0 1512k 0 --:--:-- --:--:-- --:--:-- 1648k install for i386 * installing *source* package 'SigFuge' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SigFuge' finding HTML links ... done SFfigure html SFlabels html SFnormalize html SFpval html finding level-2 HTML links ... done SigFuge-package html geneAnnot html geneDepth html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SigFuge' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SigFuge' as SigFuge_1.26.0.zip * DONE (SigFuge) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'SigFuge' successfully unpacked and MD5 sums checked
SigFuge.Rcheck/examples_i386/SigFuge-Ex.timings
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SigFuge.Rcheck/examples_x64/SigFuge-Ex.timings
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