Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:39 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE Rmagpie PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1499/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Rmagpie 1.44.0 Camille Maumet
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: Rmagpie |
Version: 1.44.0 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Rmagpie.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings Rmagpie_1.44.0.tar.gz |
StartedAt: 2020-10-17 07:35:38 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 07:38:04 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 146.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Rmagpie.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Rmagpie.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings Rmagpie_1.44.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/Rmagpie.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'Rmagpie/DESCRIPTION' ... OK * this is package 'Rmagpie' version '1.44.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Rmagpie' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: 'Biobase' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE twoLayerExtCV: warning in performAValidation(data = eset, trainIndices = extInds[[i]], noGenes = upToBestSelectedFeature, classes = classes, classifierName = classifierName, verbose = verbose, kernel = kernel, featureSelectionFun = featureSelectionFun, trainTestFun = trainTestFun): partial argument match of 'data' to 'dataset' getFeatureSelectionOptions<-,assessment: no visible global function definition for 'getNoOfOptions<-' getFeatureSelectionOptions<-,assessment: no visible global function definition for 'getNoModels<-' Undefined global functions or variables: getNoModels<- getNoOfOptions<- * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed runTwoLayerExtCV-methods 6.19 0.02 6.22 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed runTwoLayerExtCV-methods 6.75 0.02 6.76 plotErrorsFoldTwoLayerCV-methods 3.43 0.02 9.53 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/Rmagpie.Rcheck/00check.log' for details.
Rmagpie.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/Rmagpie_1.44.0.tar.gz && rm -rf Rmagpie.buildbin-libdir && mkdir Rmagpie.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rmagpie.buildbin-libdir Rmagpie_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL Rmagpie_1.44.0.zip && rm Rmagpie_1.44.0.tar.gz Rmagpie_1.44.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 141k 100 141k 0 0 2184k 0 --:--:-- --:--:-- --:--:-- 2445k install for i386 * installing *source* package 'Rmagpie' ... ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Rmagpie' finding HTML links ... done classifyNewSamples-methods html experiment-class html featureSelectionOptions-class html finalClassifier-class html findFinalClassifier-methods html geneSubsets-class html getDataset-methods html getFeatureSelectionOptions-methods html getFinalClassifier html getResults-methods html initialize-methods html plotErrorsFoldTwoLayerCV-methods html plotErrorsRepeatedOneLayerCV html plotErrorsSummaryOneLayerCV-methods html rankedGenesImg-methods html runOneLayerExtCV-methods html runTwoLayerExtCV-methods html setDataset-methods html setFeatureSelectionOptions-methods html show-methods html thresholds-class html vV70genes html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'Rmagpie' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'Rmagpie' as Rmagpie_1.44.0.zip * DONE (Rmagpie) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'Rmagpie' successfully unpacked and MD5 sums checked
Rmagpie.Rcheck/examples_i386/Rmagpie-Ex.timings
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Rmagpie.Rcheck/examples_x64/Rmagpie-Ex.timings
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