Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:36 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE ReQON PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1467/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ReQON 1.34.0 Christopher Cabanski
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: ReQON |
Version: 1.34.0 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ReQON.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings ReQON_1.34.0.tar.gz |
StartedAt: 2020-10-17 07:26:31 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 07:29:24 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 173.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ReQON.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ReQON.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings ReQON_1.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/ReQON.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ReQON/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ReQON' version '1.34.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'ReQON' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'Rsamtools' 'seqbias' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE FWSEplot: no visible global function definition for 'title' FWSEplot: no visible global function definition for 'rgb' FWSEplot: no visible global function definition for 'points' QualFreqPlot: no visible global function definition for 'title' ReQON: no visible global function definition for 'glm.fit' ReQON: no visible global function definition for 'binomial' ReadPosErrorPlot: no visible global function definition for 'title' Undefined global functions or variables: binomial glm.fit points rgb title Consider adding importFrom("grDevices", "rgb") importFrom("graphics", "points", "title") importFrom("stats", "binomial", "glm.fit") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ReQON 20.46 1.4 31.7 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ReQON 35.35 1.78 21.5 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/ReQON.Rcheck/00check.log' for details.
ReQON.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ReQON_1.34.0.tar.gz && rm -rf ReQON.buildbin-libdir && mkdir ReQON.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ReQON.buildbin-libdir ReQON_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ReQON_1.34.0.zip && rm ReQON_1.34.0.tar.gz ReQON_1.34.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1145k 100 1145k 0 0 15.2M 0 --:--:-- --:--:-- --:--:-- 16.7M install for i386 * installing *source* package 'ReQON' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ReQON' finding HTML links ... done FWSEplot html QualFreqPlot html ReQON html ReadPosErrorPlot html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ReQON' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ReQON' as ReQON_1.34.0.zip * DONE (ReQON) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'ReQON' successfully unpacked and MD5 sums checked
ReQON.Rcheck/examples_i386/ReQON-Ex.timings
|
ReQON.Rcheck/examples_x64/ReQON-Ex.timings
|