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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RUVcorr.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings RUVcorr_1.20.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/RUVcorr.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RUVcorr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RUVcorr' version '1.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RUVcorr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RUVcorr_1.20.0.tar.gz && rm -rf RUVcorr.buildbin-libdir && mkdir RUVcorr.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RUVcorr.buildbin-libdir RUVcorr_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RUVcorr_1.20.0.zip && rm RUVcorr_1.20.0.tar.gz RUVcorr_1.20.0.zip
###
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100 42097  100 42097    0     0   291k      0 --:--:-- --:--:-- --:--:--  306k

install for i386

* installing *source* package 'RUVcorr' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RUVcorr'
    finding HTML links ... done
    ECDFPlot                                html  
    PCAPlot                                 html  
    RLEPlot                                 html  
    RUVNaiveRidge                           html  
    RUVcorr                                 html  
    assessQuality                           html  
    background                              html  
    calculateThreshold                      html  
    compareRanks                            html  
    correlationPlot                         html  
    eigenvaluePlot                          html  
    empNegativeControls                     html  
    findIQR                                 html  
    findMinmaxSamples                       html  
    findWeights                             html  
    funcPara                                html  
    funcThresh                              html  
    genePlot                                html  
    histogramPlot                           html  
    is.Threshold                            html  
    is.Weights                              html  
    is.optimizeParameters                   html  
    is.simulateGEdata                       html  
    makePosSemiDef                          html  
    makeRankedList                          html  
    mashUp                                  html  
    optimizeParameters                      html  
    plot.optimizeParameters                 html  
    plotDesign                              html  
    plotThreshold                           html  
    print.simulateGEdata                    html  
    prioritise                              html  
    simulateGEdata                          html  
    splitByFactor                           html  
    wcor                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RUVcorr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RUVcorr' as RUVcorr_1.20.0.zip
* DONE (RUVcorr)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'RUVcorr' successfully unpacked and MD5 sums checked