Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:59:26 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE RNAsense PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1513/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RNAsense 1.2.0 Marcus Rosenblatt
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ WARNINGS ] | OK |
Package: RNAsense |
Version: 1.2.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RNAsense.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RNAsense_1.2.0.tar.gz |
StartedAt: 2020-10-17 04:44:13 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 05:00:04 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 950.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: RNAsense.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RNAsense.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RNAsense_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/RNAsense.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RNAsense/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RNAsense’ version ‘1.2.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RNAsense’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE combineResults: no visible binding for global variable ‘resultSwitch’ combineResults: no visible binding for global variable ‘resultFC’ combineResults : getFCupdown: no visible binding for global variable ‘resultFC’ combineResults : getFCupdown: no visible binding for global variable ‘name’ combineResults : getFCupdown: no visible binding for global variable ‘FCdetect’ getFC: no visible binding for global variable ‘mydata’ getFC: no visible binding for global variable ‘analyzeConditions’ getFC: no visible binding for global variable ‘times’ getSwitch: no visible binding for global variable ‘mydata’ getSwitch: no visible binding for global variable ‘times’ outputGeneTables: no visible binding for global variable ‘resultCombined’ outputGeneTables: no visible binding for global variable ‘times’ outputGeneTables: no visible binding for global variable ‘analyzeConditions’ outputGeneTables: no visible binding for global variable ‘timepoint’ outputGeneTables: no visible binding for global variable ‘FCdown’ outputGeneTables: no visible binding for global variable ‘FCup’ outputGeneTables: no visible binding for global variable ‘experiment’ plotSSGS: no visible binding for global variable ‘resultCombined’ plotSSGS: no visible binding for global variable ‘times’ plotSSGS: no visible binding for global variable ‘analyzeConditions’ plotSSGS : getFT: no visible binding for global variable ‘result’ plotSSGS : getFT: no visible binding for global variable ‘timepoint’ plotSSGS : getFT: no visible binding for global variable ‘FCdown’ plotSSGS : getFT: no visible binding for global variable ‘FCup’ plotSSGS : <anonymous> : <anonymous> : <anonymous> : <anonymous>: no visible binding for global variable ‘experiment’ plotSSGS: no visible binding for global variable ‘xaxis’ plotSSGS: no visible binding for global variable ‘cluster’ Undefined global functions or variables: FCdetect FCdown FCup analyzeConditions cluster experiment mydata name result resultCombined resultFC resultSwitch timepoint times xaxis * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Missing link or links in documentation object 'getFC.Rd': ‘DataFrame’ Missing link or links in documentation object 'getSwitch.Rd': ‘DataFrame’ See section 'Cross-references' in the 'Writing R Extensions' manual. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed outputGeneTables 188.321 2.597 191.182 combineResults 185.726 2.782 188.684 plotSSGS 183.410 3.527 187.158 getSwitch 103.014 1.306 104.881 getFC 50.189 1.073 51.335 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/Users/biocbuild/bbs-3.11-bioc/meat/RNAsense.Rcheck/00check.log’ for details.
RNAsense.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RNAsense ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘RNAsense’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RNAsense)
RNAsense.Rcheck/RNAsense-Ex.timings
name | user | system | elapsed | |
combineResults | 185.726 | 2.782 | 188.684 | |
getFC | 50.189 | 1.073 | 51.335 | |
getSwitch | 103.014 | 1.306 | 104.881 | |
outputGeneTables | 188.321 | 2.597 | 191.182 | |
plotSSGS | 183.410 | 3.527 | 187.158 | |