Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:31 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE QUALIFIER PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1397/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Mike Jiang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
Package: QUALIFIER |
Version: 1.32.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/QUALIFIER_1.32.0.tar.gz && rm -rf QUALIFIER.buildbin-libdir && mkdir QUALIFIER.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QUALIFIER.buildbin-libdir QUALIFIER_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL QUALIFIER_1.32.0.zip && rm QUALIFIER_1.32.0.tar.gz QUALIFIER_1.32.0.zip |
StartedAt: 2020-10-16 18:19:36 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 18:20:18 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 42.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/QUALIFIER_1.32.0.tar.gz && rm -rf QUALIFIER.buildbin-libdir && mkdir QUALIFIER.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QUALIFIER.buildbin-libdir QUALIFIER_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL QUALIFIER_1.32.0.zip && rm QUALIFIER_1.32.0.tar.gz QUALIFIER_1.32.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 960k 100 960k 0 0 1858k 0 --:--:-- --:--:-- --:--:-- 1882k install for i386 * installing *source* package 'QUALIFIER' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'QUALIFIER' finding HTML links ... done ITNQASTUDY html QUALIFIER-package html getQAStats html finding level-2 HTML links ... done initDB html outlierFunctions html plot-methods html qaCheck-methods html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWUlX8Z/R.INSTALL151863ad5ccf/QUALIFIER/man/qaCheck-methods.Rd:40: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWUlX8Z/R.INSTALL151863ad5ccf/QUALIFIER/man/qaCheck-methods.Rd:129: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic qaPreprocess html qaReport html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWUlX8Z/R.INSTALL151863ad5ccf/QUALIFIER/man/qaReport.Rd:20: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWUlX8Z/R.INSTALL151863ad5ccf/QUALIFIER/man/qaReport.Rd:60: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic qaTask-class html read.qaTask html saveToDB html save_db html ** building package indices ** installing vignettes 'QUALIFIER.Rmd' ** testing if installed package can be loaded from temporary location Warning: Package 'QUALIFIER' is deprecated and will be removed from Bioconductor version 3.12 ** testing if installed package can be loaded from final location Warning: Package 'QUALIFIER' is deprecated and will be removed from Bioconductor version 3.12 ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'QUALIFIER' ... ** testing if installed package can be loaded Warning: Package 'QUALIFIER' is deprecated and will be removed from Bioconductor version 3.12 * MD5 sums packaged installation of 'QUALIFIER' as QUALIFIER_1.32.0.zip * DONE (QUALIFIER) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'QUALIFIER' successfully unpacked and MD5 sums checked