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INSTALL report for QUALIFIER on tokay2

This page was generated on 2020-10-17 11:57:31 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE QUALIFIER PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1397/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QUALIFIER 1.32.0
Mike Jiang
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/QUALIFIER
Branch: RELEASE_3_11
Last Commit: e53ad3c
Last Changed Date: 2020-04-27 14:28:41 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: QUALIFIER
Version: 1.32.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/QUALIFIER_1.32.0.tar.gz && rm -rf QUALIFIER.buildbin-libdir && mkdir QUALIFIER.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QUALIFIER.buildbin-libdir QUALIFIER_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL QUALIFIER_1.32.0.zip && rm QUALIFIER_1.32.0.tar.gz QUALIFIER_1.32.0.zip
StartedAt: 2020-10-16 18:19:36 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:20:18 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 42.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/QUALIFIER_1.32.0.tar.gz && rm -rf QUALIFIER.buildbin-libdir && mkdir QUALIFIER.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QUALIFIER.buildbin-libdir QUALIFIER_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL QUALIFIER_1.32.0.zip && rm QUALIFIER_1.32.0.tar.gz QUALIFIER_1.32.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  960k  100  960k    0     0  1858k      0 --:--:-- --:--:-- --:--:-- 1882k

install for i386

* installing *source* package 'QUALIFIER' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'QUALIFIER'
    finding HTML links ... done
    ITNQASTUDY                              html  
    QUALIFIER-package                       html  
    getQAStats                              html  
    finding level-2 HTML links ... done

    initDB                                  html  
    outlierFunctions                        html  
    plot-methods                            html  
    qaCheck-methods                         html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWUlX8Z/R.INSTALL151863ad5ccf/QUALIFIER/man/qaCheck-methods.Rd:40: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWUlX8Z/R.INSTALL151863ad5ccf/QUALIFIER/man/qaCheck-methods.Rd:129: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic
    qaPreprocess                            html  
    qaReport                                html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWUlX8Z/R.INSTALL151863ad5ccf/QUALIFIER/man/qaReport.Rd:20: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWUlX8Z/R.INSTALL151863ad5ccf/QUALIFIER/man/qaReport.Rd:60: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic
    qaTask-class                            html  
    read.qaTask                             html  
    saveToDB                                html  
    save_db                                 html  
** building package indices
** installing vignettes
   'QUALIFIER.Rmd' 
** testing if installed package can be loaded from temporary location
Warning: Package 'QUALIFIER' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'QUALIFIER' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'QUALIFIER' ...
** testing if installed package can be loaded
Warning: Package 'QUALIFIER' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'QUALIFIER' as QUALIFIER_1.32.0.zip
* DONE (QUALIFIER)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'QUALIFIER' successfully unpacked and MD5 sums checked