Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:29 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE ProtGenerics PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1371/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ProtGenerics 1.20.0 Laurent Gatto
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: ProtGenerics |
Version: 1.20.0 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ProtGenerics.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings ProtGenerics_1.20.0.tar.gz |
StartedAt: 2020-10-17 07:08:39 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 07:09:20 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 40.9 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: ProtGenerics.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ProtGenerics.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings ProtGenerics_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/ProtGenerics.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ProtGenerics/DESCRIPTION' ... OK * this is package 'ProtGenerics' version '1.20.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ProtGenerics' can be installed ... WARNING Found the following significant warnings: Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsFJAGs/R.INSTALLed02f463e44/ProtGenerics/man/protgenerics.Rd:206: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/ProtGenerics.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/ProtGenerics.Rcheck/00check.log' for details.
ProtGenerics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ProtGenerics_1.20.0.tar.gz && rm -rf ProtGenerics.buildbin-libdir && mkdir ProtGenerics.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ProtGenerics.buildbin-libdir ProtGenerics_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ProtGenerics_1.20.0.zip && rm ProtGenerics_1.20.0.tar.gz ProtGenerics_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 5809 100 5809 0 0 85240 0 --:--:-- --:--:-- --:--:-- 95229 install for i386 * installing *source* package 'ProtGenerics' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading Creating a new generic function for 'smooth' in package 'ProtGenerics' ** help *** installing help indices converting help for package 'ProtGenerics' finding HTML links ... done protgenerics html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsFJAGs/R.INSTALLed02f463e44/ProtGenerics/man/protgenerics.Rd:206: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ProtGenerics' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ProtGenerics' as ProtGenerics_1.20.0.zip * DONE (ProtGenerics) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'ProtGenerics' successfully unpacked and MD5 sums checked
ProtGenerics.Rcheck/examples_i386/ProtGenerics-Ex.timings
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ProtGenerics.Rcheck/examples_x64/ProtGenerics-Ex.timings
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