##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PrInCE.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings PrInCE_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/PrInCE.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PrInCE/DESCRIPTION' ... OK
* this is package 'PrInCE' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PrInCE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
predict_ensemble     7.69   0.27    7.97
calculate_precision  6.61   0.37    6.98
predict_interactions 6.19   0.23    6.42
PrInCE               4.86   0.25    5.11
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
predict_ensemble     7.91   0.13    8.03
threshold_precision  6.57   0.11    6.69
calculate_precision  6.08   0.32    6.39
PrInCE               6.07   0.17    6.25
predict_interactions 5.91   0.14    6.05
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PrInCE_1.4.0.tar.gz && rm -rf PrInCE.buildbin-libdir && mkdir PrInCE.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PrInCE.buildbin-libdir PrInCE_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PrInCE_1.4.0.zip && rm PrInCE_1.4.0.tar.gz PrInCE_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1589k  100 1589k    0     0  8154k      0 --:--:-- --:--:-- --:--:-- 8409k

install for i386

* installing *source* package 'PrInCE' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: PrInCE
Registered S3 method overwritten by 'quantmod':
  method            from
  as.zoo.data.frame zoo 
*** installing help indices
  converting help for package 'PrInCE'
    finding HTML links ... done
    PrInCE                                  html  
    finding level-2 HTML links ... done

    adjacency_matrix_from_data_frame        html  
    adjacency_matrix_from_list              html  
    aic                                     html  
    build_gaussians                         html  
    calculate_features                      html  
    calculate_precision                     html  
    check_gaussians                         html  
    choose_gaussians                        html  
    clean_profile                           html  
    clean_profiles                          html  
    co_apex                                 html  
    concatenate_features                    html  
    detect_complexes                        html  
    filter_profiles                         html  
    fit_curve                               html  
    fit_gaussians                           html  
    gold_standard                           html  
    impute_neighbors                        html  
    is_unweighted                           html  
    is_weighted                             html  
    kristensen                              html  
    kristensen_gaussians                    html  
    make_feature_from_data_frame            html  
    make_feature_from_expression            html  
    make_initial_conditions                 html  
    make_labels                             html  
    match_matrix_dimensions                 html  
    predict_ensemble                        html  
    predict_interactions                    html  
    replace_missing_data                    html  
    scott                                   html  
    scott_gaussians                         html  
    threshold_precision                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PrInCE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PrInCE' as PrInCE_1.4.0.zip
* DONE (PrInCE)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'PrInCE' successfully unpacked and MD5 sums checked