Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:59:05 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE NuPoP PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1210/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
NuPoP 1.38.0 Ji-Ping Wang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | [ OK ] |
Package: NuPoP |
Version: 1.38.0 |
Command: rm -rf NuPoP.buildbin-libdir && mkdir NuPoP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NuPoP_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NuPoP.buildbin-libdir |
StartedAt: 2020-10-17 07:35:47 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 07:36:06 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 19.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: NuPoP_1.38.0.tgz |
PackageFileSize: 1.99 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf NuPoP.buildbin-libdir && mkdir NuPoP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NuPoP_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NuPoP.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=NuPoP.buildbin-libdir NuPoP_1.38.0.tar.gz' >>>>>>> * installing *source* package ‘NuPoP’ ... ** using staged installation ** libs gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c vtbfb.f90 -o vtbfb.o vtbfb.f90:13:32: character*80 seqName,out1,out2; character*2 tpc 1 Warning: Unused variable ‘out2’ declared at (1) [-Wunused-variable] gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c vtbfbNL4.f90 -o vtbfbNL4.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o NuPoP.so vtbfb.o vtbfbNL4.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.11-bioc/meat/NuPoP.buildbin-libdir/00LOCK-NuPoP/00new/NuPoP/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NuPoP) >>>>>>> >>>>>>> FIXING LINKS FOR NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "NuPoP.buildbin-libdir/NuPoP/libs/NuPoP.so"