Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:31 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE EnrichmentBrowser PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 545/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
EnrichmentBrowser 2.18.2 Ludwig Geistlinger
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: EnrichmentBrowser |
Version: 2.18.2 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EnrichmentBrowser.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings EnrichmentBrowser_2.18.2.tar.gz |
StartedAt: 2020-10-17 03:43:57 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 03:56:05 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 727.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: EnrichmentBrowser.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EnrichmentBrowser.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings EnrichmentBrowser_2.18.2.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/EnrichmentBrowser.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'EnrichmentBrowser/DESCRIPTION' ... OK * this is package 'EnrichmentBrowser' version '2.18.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'EnrichmentBrowser' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: 'pathview:::parseKGML2Graph2' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ebrowser 79.54 5.40 107.52 eaBrowse 12.72 1.58 18.69 getGenesets 11.95 0.17 15.72 deAna 5.32 0.86 6.17 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ebrowser 53.62 3.84 126.59 getGenesets 12.89 0.28 16.73 eaBrowse 7.47 0.66 97.19 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/EnrichmentBrowser.Rcheck/00check.log' for details.
EnrichmentBrowser.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/EnrichmentBrowser_2.18.2.tar.gz && rm -rf EnrichmentBrowser.buildbin-libdir && mkdir EnrichmentBrowser.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EnrichmentBrowser.buildbin-libdir EnrichmentBrowser_2.18.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL EnrichmentBrowser_2.18.2.zip && rm EnrichmentBrowser_2.18.2.tar.gz EnrichmentBrowser_2.18.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2 695k 2 16384 0 0 251k 0 0:00:02 --:--:-- 0:00:02 275k 100 695k 100 695k 0 0 9878k 0 --:--:-- --:--:-- --:--:-- 10.4M install for i386 * installing *source* package 'EnrichmentBrowser' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'EnrichmentBrowser' finding HTML links ... done combResults html compileGRN html finding level-2 HTML links ... done configEBrowser html deAna html downloadPathways html eaBrowse html ebrowser html getGenesets html ggeaGraph html idMap html isAvailable html makeExampleData html nbea html normalize html plots html probe2gene html readSE html sbea html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'EnrichmentBrowser' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'EnrichmentBrowser' as EnrichmentBrowser_2.18.2.zip * DONE (EnrichmentBrowser) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'EnrichmentBrowser' successfully unpacked and MD5 sums checked
EnrichmentBrowser.Rcheck/examples_i386/EnrichmentBrowser-Ex.timings
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EnrichmentBrowser.Rcheck/examples_x64/EnrichmentBrowser-Ex.timings
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